TSUNAMI: A GPU Implementation of the WFA Algorithm

Pairwise sequence alignment represents a fundamental step in the genome assembly pipeline, being the most time-consuming step and the bottleneck factor in multiple bioinformatics applications. Exact pairwise alignment methods like Smith-Waterman and Needleman-Wunsch, often cannot satisfy the perform...

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Bibliographic Details

Published in:	2023 32nd International Conference on Parallel Architectures and Compilation Techniques (PACT) pp. 150 - 161
Main Authors:	Gerometta, Giulia, Zeni, Alberto, Santambrogio, Marco D.
Format:	Conference Proceeding
Language:	English
Published:	IEEE 21.10.2023
Subjects:	Genome Alignment GPU Graphics processing units HPC Pipelines Rendering (computer graphics) Silver Software Software algorithms Tsunami WFA
Online Access:	Get full text
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