BLESS: Bandwidth and Locality Enhanced SMEM Seeding Acceleration for DNA Sequencing

In an era marked by the pervasive spread of harmful viruses like COVID-19, the importance of DNA sequencing has grown significantly, given its crucial role in devising effective countermeasures. The seeding process, which aims to find locations of super-maximal exact matches (SMEM) between the DNA s...

Ausführliche Beschreibung

Bibliographische Detailangaben

Veröffentlicht in:	2024 ACM/IEEE 51st Annual International Symposium on Computer Architecture (ISCA) S. 582 - 596
Hauptverfasser:	Han, Seunghee, Moon, Seungjae, Suh, Teokkyu, Heo, JaeHoon, Kim, Joo-Young
Format:	Tagungsbericht
Sprache:	Englisch
Veröffentlicht:	IEEE 29.06.2024
Schlagworte:	Bandwidth Data Locality DNA DNA Sequencing Genomics Hardware Accelerator Memory management Read Alignment Runtime Sequential analysis SMEM Seeding Software-Hardware Co-design Switches System performance
Online-Zugang:	Volltext
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!