Rapid GPU-Based Pangenome Graph Layout

Computational Pangenomics is an emerging field that studies genetic variation using a graph structure encompassing multiple genomes. Visualizing pangenome graphs is vital for understanding genome diversity. Yet, handling large graphs can be challenging due to the high computational demands of the gr...

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Bibliographic Details

Published in:	SC24: International Conference for High Performance Computing, Networking, Storage and Analysis pp. 1 - 19
Main Authors:	Li, Jiajie, Schmelzle, Jan-Niklas, Du, Yixiao, Heumos, Simon, Guarracino, Andrea, Guidi, Giulia, Prins, Pjotr, Garrison, Erik, Zhang, Zhiru
Format:	Conference Proceeding
Language:	English
Published:	IEEE 17.11.2024
Subjects:	Bioinformatics Genomics GPU acceleration Graph layout High performance computing Layout Measurement Merging Pangenomics Parallel processing
Online Access:	Get full text
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