Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping

Genome analysis is becoming more important in the fields of forensic science, medicine, and history. Sequencing technologies such as High Throughput Sequencing (HTS) and Third Generation Sequencing (TGS) have greatly accelerated genome sequencing. However, genome read mapping remains significantly s...

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Bibliographic Details
Published in:	Digest of technical papers - IEEE/ACM International Conference on Computer-Aided Design pp. 1 - 9
Main Authors:	Laguna, Ann Franchesca, Gamaarachchi, Hasindu, Yin, Xunzhao, Niemier, Michael, Parameswaran, Sri, Hu, X. Sharon
Format:	Conference Proceeding
Language:	English
Published:	Association on Computer Machinery 02.11.2020
Subjects:	Acceleration Approximation algorithms bioinformatics content-addressable storage data transfer DNA DNA read mapping Encoding execution speed fast seed and vote algorithm Ferroelectric FET forensic science FSVA genome analysis genome read mapping accelerator genome sequencing genomics Heuristic algorithms high throughput sequencing in-memory accelerator in-memory computing memory-bandwidth bottleneck molecular biophysics parallel processing processing unit read mapping approach seed-and-extend Seed-and-Vote seed-and-vote based in-memory accelerator Sequential analysis ternary content addressable memories third generation sequencing
ISSN:	1558-2434
Online Access:	Get full text
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