From Scripted HPC-Based NGS Pipelines to Workflows on the Cloud

In this paper we describe our initial experiences in the Cloud-e-Genome project with moving the whole exome sequencing pipeline from the scripted HPC-based solution to a workflow enactment system running in the cloud. We discuss shortcomings of the existing approach based on scripts and list benefit...

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Bibliographic Details

Published in:	2014 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing pp. 694 - 700
Main Authors:	Cala, Jacek, Yaobo Xu, Wijaya, Eldarina Azfar, Missier, Paolo
Format:	Conference Proceeding
Language:	English
Published:	IEEE 01.05.2014
Subjects:	Bioinformatics Cloud computing Computational modeling Genomics Libraries Pipelines
Online Access:	Get full text
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