Search Results - software and algorithmic structure

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  1. 1

    Increased usability, algorithmic improvements and incorporation of data mining for structure calculation of proteins with REDCRAFT software package by Cole, Casey, Parks, Caleb, Rachele, Julian, Valafar, Homayoun

    ISSN: 1471-2105, 1471-2105
    Published: London BioMed Central 03.12.2020
    Published in BMC bioinformatics (03.12.2020)
    “… In previous works, the software package REDCRAFT has been presented as a means of harnessing the information containing in RDCs for structure calculation of proteins…”
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    Journal Article
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    Scalable Fragmentation for Large Chemical Systems: Software and Algorithmic Advancements Towards Large Electronic Structure Calculations by Broderick, Dustin R

    ISBN: 9798314892817
    Published: ProQuest Dissertations & Theses 01.01.2025
    “…Fragmentation methods are a promising avenue for scaling ab initio electronic structure methods and for systematically encoding training data for machine learning…”
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    Dissertation
  4. 4

    On Algorithmic Descriptions and Software Implementations for Multi-objective Optimisation: A Comparative Study by Rostami, Shahin, Neri, Ferrante, Gyaurski, Kiril

    ISSN: 2662-995X, 2661-8907
    Published: Singapore Springer Singapore 01.09.2020
    Published in SN computer science (01.09.2020)
    “… Some of the most promising and versatile algorithms have been implemented in software platforms…”
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    Journal Article
  5. 5

    Software and Algorithmic Aspects of Parallel Calculation of Non-Isothermal Moisture Transfer in Fractal-Structure Materials by Sokolovskyy, Yaroslav, Yarkun, Volodymyr, Levkovych, Mar'iana, Storozhuk, Oleksandr, Kapran, Ihor

    ISSN: 2573-5373
    Published: IEEE 12.05.2021
    “…A new mathematical model of the nonstationary process of heat and moisture transfer in the two-dimensional region is constructed on the basis of the use of…”
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    Conference Proceeding
  6. 6

    Algorithmic Regimes: Methods, Interactions, and Politics by Jarke, Juliane, Prietl, Bianca, Egbert, Simon, Boeva, Yana, Heuer, Hendrik

    ISBN: 9789463728485, 9463728481, 1041175450, 9781041175452, 9781040792742, 100369067X, 9781003690672, 104079274X, 1040778062, 9781040778067, 9789048556908, 9048556902
    Published: Oxford Amsterdam University Press 2024
    “…The volume offers a diverse collection of contributions along three perspectives on algorithmic regimes…”
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    eBook
  7. 7

    Engines of Order: A Mechanology of Algorithmic Techniques by Rieder, Bernhard

    ISBN: 9462986193, 9789462986190, 9789048537419, 904853741X, 9781041178750, 1041178751, 104077749X, 9781040777497, 1040792170, 9781040792179, 9781003694786, 1003694780
    Published: Netherlands Amsterdam University Press 2020
    “…Building on the philosophy of Gilbert Simondon and the cultural techniques tradition, this book examines the constructive and cumulative character of software and retraces the historical trajectories…”
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    eBook
  8. 8

    Software-algorithmic System for Locating and Processing Acoustic Emission by Sagatov, Miraziz, Komilova, Kholidakhon, Dadaboev, Alijon, Akkulova, Yulduz, Mamadjanov, Bohodir

    ISSN: 2267-1242, 2555-0403, 2267-1242
    Published: Les Ulis EDP Sciences 01.01.2023
    Published in E3S web of conferences (01.01.2023)
    “…: development of the theory and methods for diagnosing and predicting the strength and reliability of structures, theoretical and experimental studies of fracture processes and the corresponding…”
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    Journal Article Conference Proceeding
  9. 9

    Algorithmic Regimes: Methods, Interactions, and Politics

    ISBN: 9789463728485, 9463728481, 9789048556908, 9048556902
    Published: Amsterdam Amsterdam University Press 2024
    “… and what and whose knowledge is valued and deemed valid. To attend to this fundamental change, the authors propose the concept of algorithmic regimes and demonstrate…”
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    eBook
  10. 10

    Improved Algorithmic Complexity for the 3SEQ Recombination Detection Algorithm by Lam, Ha Minh, Ratmann, Oliver, Boni, Maciej F

    ISSN: 0737-4038, 1537-1719, 1537-1719
    Published: United States Oxford University Press 01.01.2018
    Published in Molecular biology and evolution (01.01.2018)
    “…s. Here, we introduce an improvement to the algorithmic complexity of this computation from O…”
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    Journal Article
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    The University and the Algorithmic Gaze by Gourlay, Lesley

    ISBN: 9781350281585, 1350281581
    Published: London Bloomsbury Academic 2025
    “…This open access book takes an innovative and critical look at the ways in which digital data and algorithms are changing the face of higher education in…”
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    eBook
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    Engines of Order: A Mechanology of Algorithmic Techniques by Rieder, Bernhard

    ISBN: 9462986193, 9789462986190, 9789048537419, 904853741X
    Published: Amsterdam Amsterdam University Press 2020
    “…Over the last decades, and in particular since the widespread adoption of the Internet, encounters with algorithmic procedures…”
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    eBook
  13. 13

    Discrete adjoint methodology for general multiphysics problems: A modular and efficient algorithmic outline with implementation in an open-source simulation software by Burghardt, Ole, Gomes, Pedro, Kattmann, Tobias, Economon, Thomas D., Gauger, Nicolas R., Palacios, Rafael

    ISSN: 1615-147X, 1615-1488
    Published: Berlin/Heidelberg Springer Berlin Heidelberg 01.01.2022
    “… between them. By applying the reverse mode of algorithmic differentiation to each discipline, and by using a specialized recording strategy, diagonal and cross terms can be evaluated individually, thereby allowing…”
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    Journal Article
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    CONSTRUCT: an algorithmic tool for identifying functional or structurally important regions in protein tertiary structure by Chivot, Lucas, Mathieux, Noé, Cosson, Anna, Bridier-Nahmias, Antoine, Favennec, Loïc, Gelly, Jean-Christophe, Clain, Jérôme, Coppée, Romain

    ISSN: 1367-4811, 1367-4803, 1367-4811
    Published: England Oxford University Press 12.04.2025
    Published in Bioinformatics (Oxford, England) (12.04.2025)
    “… Standard methods assume independent substitution rates across sites, and the most conserved ones are widely distributed in protein tertiary structure…”
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    Journal Article
  15. 15

    Algorithmic Meta-theorems for Restrictions of Treewidth by Lampis, Michael

    ISSN: 0178-4617, 1432-0541
    Published: New York Springer-Verlag 01.09.2012
    Published in Algorithmica (01.09.2012)
    “…Possibly the most famous algorithmic meta-theorem is Courcelle’s theorem, which states that all MSO-expressible graph properties are decidable in linear time for graphs of bounded treewidth…”
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    Journal Article
  16. 16

    Algorithmic Graph Theory, Reinforcement Learning and Game Theory in MD Simulations: From 3D Structures to Topological 2D-Molecular Graphs (2D-MolGraphs) and Vice Versa by Bougueroua, Sana, Bricage, Marie, Aboulfath, Ylène, Barth, Dominique, Gaigeot, Marie-Pierre

    ISSN: 1420-3049, 1420-3049
    Published: Switzerland MDPI AG 23.03.2023
    Published in Molecules (Basel, Switzerland) (23.03.2023)
    “… We show that the use of algorithmic graph theory not only provides a direct and fast methodology to identify conformers sampled over time but also allows to follow the interconversions…”
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    Journal Article
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    Algorithmic Meta-Theorems for Combinatorial Reconfiguration Revisited by Gima, Tatsuya, Ito, Takehiro, Kobayashi, Yasuaki, Otachi, Yota

    ISSN: 0178-4617, 1432-0541
    Published: New York Springer US 01.11.2024
    Published in Algorithmica (01.11.2024)
    “…) presented an algorithmic meta-theorem for reconfiguration problems that says if the feasibility can be expressed in monadic second-order logic (MSO…”
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    Journal Article
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    Cutwidth: Obstructions and Algorithmic Aspects by Giannopoulou, Archontia C., Pilipczuk, Michał, Raymond, Jean-Florent, Thilikos, Dimitrios M., Wrochna, Marcin

    ISSN: 0178-4617, 1432-0541
    Published: New York Springer US 01.02.2019
    Published in Algorithmica (01.02.2019)
    “… ) . As an interesting algorithmic byproduct, we design a new fixed-parameter algorithm for computing the cutwidth of a graph that runs in time…”
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    Journal Article
  20. 20

    A survey of algorithmic skeleton frameworks: high-level structured parallel programming enablers by González-Vélez, Horacio, Leyton, Mario

    ISSN: 0038-0644, 1097-024X
    Published: Chichester, UK John Wiley & Sons, Ltd 01.11.2010
    Published in Software, practice & experience (01.11.2010)
    “…), parallel software development environments furnishing a collection of parameterizable algorithmic skeletons, where the control flow, nesting, resource monitoring, and portability of the resulting…”
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    Journal Article