Výsledky vyhledávání - python interfaces _ reference format*

imzML Writer: An Easy-to-Use Python Pipeline for Conversion of Continuously Acquired Raw Mass Spectrometry Imaging Data to imzML Format Autor Monaghan, Joseph, Nguyen, Kiera, Woytowich, Nicholas, Keyowski, Alora, Duncan, Kyle D

“…). Here, we present imzML Writer, an easy-to-use Python application with a graphical…”
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SBML2HYB: a Python interface for SBML compatible hybrid modeling Autor Pinto, José, Costa, Rafael S, Alexandre, Leonardo, Ramos, João, Oliveira, Rui

“… The tool supports a user-friendly export interface with an internal format validator. Two case studies illustrate the use of the sbml2hyb tool…”
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VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions Autor Freeman, Peter J., Hart, Reece K., Gretton, Liam J., Brookes, Anthony J., Dalgleish, Raymond

“…‐source hgvs Python package (https://github.com/biocommons/hgvs) provides a programmatic interface for parsing, manipulating, formatting, and validating of variants according to the HGVS recommendations, but does not provide a user…”
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Empowering High-Throughput High-Content Analysis of Microphysiological Models: Open-Source Software for Automated Image Analysis of Microvessel Formation and Cell Invasion Autor Wiggin, Noah, Cook, Carson, Black, Mitchell, Cadena, Ines, Rahal-Arabi, Salam, Asnes, Chandler L., Ivanova, Yoanna, Hettiaratchi, Marian H, Hind, Laurel E, Fogg, Kaitlin C

“…Purpose The primary aim of this study was to develop an open-source Python-based software for the automated analysis of dynamic cell behaviors in microphysiological models using non-confocal microscopy…”
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A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank Autor Smelter, Andrey, Astra, Morgan, Moseley, Hunter N. B.

“…s. It is primarily maintained and accessed in a flat file ASCII format known as NMR-STAR. While the format is human readable, the size of most BMRB entries makes computer…”
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DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation Autor Dohmen, Elias, Aubel, Margaux, Eicholt, Lars A, Roginski, Paul, Luria, Victor, Karger, Amir, Grandchamp, Anna

“… Results This work presents a standardized annotation format to document the methodology of de novo gene datasets in a reproducible way…”
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jmzTab-M: A Reference Parser, Writer, and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard Autor Hoffmann, Nils, Hartler, Jürgen, Ahrends, Robert

“…mzTab 2.0 for metabolomics (mzTab-M) is the most recent standard format developed in collaboration by the Proteomics and Metabolomics Standards Initiatives including contributions by the recently founded Lipidomics Standards Initiative…”
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Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments Autor Ingargiola, Antonino, Laurence, Ted, Boutelle, Robert, Weiss, Shimon, Michalet, Xavier

“…We introduce Photon-HDF5, an open and efficient file format to simplify exchange and long-term accessibility of data from single-molecule fluorescence experiments based on photon-counting detectors…”
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Digital signal processing with python programming Autor Charbit, Maurice

“…The parameter estimation and hypothesis testing are the basic tools in statistical inference. These techniques occur in many applications of data processing.,…”
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Sensortoolkit—A Python Library for Standardizing the Ingestion, Analysis, and Reporting of Air Sensor Data for Performance Evaluation Autor Kumar, Menaka, Frederick, Samuel G., Barkjohn, Karoline K., Clements, Andrea L.

“… The library compares the collocated air sensor against reference monitor data and includes procedures to reformat both datasets into a standardized format using an interactive setup module…”
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pyM2aia: Python interface for mass spectrometry imaging with focus on deep learning Autor Cordes, Jonas, Enzlein, Thomas, Hopf, Carsten, Wolf, Ivo

“… pyM2aia provides interfaces to its parent application M2aia, which offers interactive capabilities for exploring and annotating MSI data in imzML format…”
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Enhancing RDM in Galaxy by integrating RO-Crate Autor De Geest, Paul, Coppens, Frederik, Soiland-Reyes, Stian, Eguinoa, Ignacio, Leo, Simone

“…) to enable FAIR and reproducible data analysis. RO-Crate (Soiland-Reyes et al. 2022) is a generic packaging format containing datasets and their description using standards for FAIR Linked Data…”
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Pythonic Black-box Electronic Structure Tool (PyBEST). An open-source Python platform for electronic structure calculations at the interface between chemistry and physics Autor Boguslawski, Katharina, Leszczyk, Aleksandra, Nowak, Artur, Brzęk, Filip, Żuchowski, Piotr Szymon, Kędziera, Dariusz, Tecmer, Paweł

“… The package provides an efficient and reliable platform for electronic structure calculations at the interface between chemistry and physics using unique electronic…”
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Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python Autor Kuehl, Malte, Wong, Milagros N, Wanner, Nicola, Bonn, Stefan, Puelles, Victor G

“… Here we present pytximport, a Python implementation of the tximport R package that supports a variety of input formats, different modes of bias correction, inferential replicates, gene-level…”
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QuTiP 2: A Python framework for the dynamics of open quantum systems Autor Johansson, J.R., Nation, P.D., Nori, Franco

“…We present version 2 of QuTiP, the Quantum Toolbox in Python. Compared to the preceding version [J.R. Johansson, P.D. Nation, F. Nori, Comput. Phys. Commun. 183 (2012) 1760…”
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pvlib iotools—Open-source Python functions for seamless access to solar irradiance data Autor Jensen, Adam R., Anderson, Kevin S., Holmgren, William F., Mikofski, Mark A., Hansen, Clifford W., Boeman, Leland J., Loonen, Roel

“… However, lack of standardization in data formats and access interfaces across providers constitutes a major barrier to entry for new users. pvlib…”
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ParamAP: Standardized Parameterization of Sinoatrial Node Myocyte Action Potentials Autor Rickert, Christian, Proenza, Catherine

“… ParamAP employs a graphic user interface with automatic and user-customizable input modes, and it outputs data files in text and PDF formats…”
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Python for MATLAB Development - Extend MATLAB with 300,000+ Modules from the Python Package Index Autor Danial, Albert

“… A reference guide to setting up and managing a Python environment that integrates cleanly with MATLAB…”
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Bite-Size Python: An Introduction to Python Programming Autor Speight, April

“…! Python has now surpassed Java as the most commonly used programming language. As the language rises in popularity, this complete guide can teach basic Python concepts to kids with its simple, friendly format. Bite-Size Python…”
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Adventures in Raspberry Pi Autor Philbin, Carrie Anne

“… Each project includes a lively and informative video to reinforce the lessons. It's perfect for young, eager self-learners-your kids can jump in, set up their Raspberry Pi, and go through the lessons on their own…”
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