Search Results - python ((interface acm) OR (((interfaces cs) OR (interfaces _)))) reference format

SBML2HYB: a Python interface for SBML compatible hybrid modeling by Pinto, José, Costa, Rafael S, Alexandre, Leonardo, Ramos, João, Oliveira, Rui

“… The tool supports a user-friendly export interface with an internal format validator. Two case studies illustrate the use of the sbml2hyb tool…”
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imzML Writer: An Easy-to-Use Python Pipeline for Conversion of Continuously Acquired Raw Mass Spectrometry Imaging Data to imzML Format by Monaghan, Joseph, Nguyen, Kiera, Woytowich, Nicholas, Keyowski, Alora, Duncan, Kyle D

“…). Here, we present imzML Writer, an easy-to-use Python application with a graphical…”
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pyM2aia: Python interface for mass spectrometry imaging with focus on deep learning by Cordes, Jonas, Enzlein, Thomas, Hopf, Carsten, Wolf, Ivo

“… pyM2aia provides interfaces to its parent application M2aia, which offers interactive capabilities for exploring and annotating MSI data in imzML format…”
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Sensortoolkit—A Python Library for Standardizing the Ingestion, Analysis, and Reporting of Air Sensor Data for Performance Evaluation by Kumar, Menaka, Frederick, Samuel G., Barkjohn, Karoline K., Clements, Andrea L.

“… The library compares the collocated air sensor against reference monitor data and includes procedures to reformat both datasets into a standardized format using an interactive setup module…”
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Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python by Kuehl, Malte, Wong, Milagros N, Wanner, Nicola, Bonn, Stefan, Puelles, Victor G

“… Here we present pytximport, a Python implementation of the tximport R package that supports a variety of input formats, different modes of bias correction, inferential replicates, gene-level…”
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A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank by Smelter, Andrey, Astra, Morgan, Moseley, Hunter N. B.

“…s. It is primarily maintained and accessed in a flat file ASCII format known as NMR-STAR. While the format is human readable, the size of most BMRB entries makes computer…”
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A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository by Smelter, Andrey, Moseley, Hunter N. B.

“… The data and metadata for each study is deposited, stored, and accessed via files in the domain-specific ‘mwTab’ flat file format…”
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Free Analysis and Visualization Programs for Electrochemical Impedance Spectroscopy Coded in Python by SUZUKI, Tohru S., KOBAYASHI, Kiyoshi

“…New programs for fitting using an equivalent circuit model and data visualization of electrochemical impedance spectroscopy were developed using Python and its open-source libraries…”
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FragHub: A Mass Spectral Library Data Integration Workflow by Dablanc, Axel, Hennechart, Solweig, Perez, Amélie, Cabanac, Guillaume, Guitton, Yann, Paulhe, Nils, Lyan, Bernard, Jamin, Emilien L, Giacomoni, Franck, Marti, Guillaume

“… Despite their importance, the practical application of OMSLs is hampered by the lack of standardized file formats, metadata fields, and supporting ontology…”
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VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions by Freeman, Peter J., Hart, Reece K., Gretton, Liam J., Brookes, Anthony J., Dalgleish, Raymond

“…‐source hgvs Python package (https://github.com/biocommons/hgvs) provides a programmatic interface for parsing, manipulating, formatting, and validating of variants according to the HGVS recommendations, but does not provide a user…”
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DeNoFo: a file format and toolkit for standardized, comparable de novo gene annotation by Dohmen, Elias, Aubel, Margaux, Eicholt, Lars A, Roginski, Paul, Luria, Victor, Karger, Amir, Grandchamp, Anna

“… Results This work presents a standardized annotation format to document the methodology of de novo gene datasets in a reproducible way…”
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QuTiP 2: A Python framework for the dynamics of open quantum systems by Johansson, J.R., Nation, P.D., Nori, Franco

“…We present version 2 of QuTiP, the Quantum Toolbox in Python. Compared to the preceding version [J.R. Johansson, P.D. Nation, F. Nori, Comput. Phys. Commun. 183 (2012) 1760…”
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pvlib iotools—Open-source Python functions for seamless access to solar irradiance data by Jensen, Adam R., Anderson, Kevin S., Holmgren, William F., Mikofski, Mark A., Hansen, Clifford W., Boeman, Leland J., Loonen, Roel

“… However, lack of standardization in data formats and access interfaces across providers constitutes a major barrier to entry for new users. pvlib…”
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jmzTab-M: A Reference Parser, Writer, and Validator for the Proteomics Standards Initiative mzTab 2.0 Metabolomics Standard by Hoffmann, Nils, Hartler, Jürgen, Ahrends, Robert

“…mzTab 2.0 for metabolomics (mzTab-M) is the most recent standard format developed in collaboration by the Proteomics and Metabolomics Standards Initiatives including contributions by the recently founded Lipidomics Standards Initiative…”
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Bite-Size Python: An Introduction to Python Programming by Speight, April

“…! Python has now surpassed Java as the most commonly used programming language. As the language rises in popularity, this complete guide can teach basic Python concepts to kids with its simple, friendly format. Bite-Size Python…”
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AMEP: The active matter evaluation package for Python by Hecht, Lukas, Dormann, Kay-Robert, Spanheimer, Kai Luca, Ebrahimi, Mahdieh, Cordts, Malte, Mandal, Suvendu, Mukhopadhyay, Aritra K., Liebchen, Benno

“…The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations…”
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Python for MATLAB Development - Extend MATLAB with 300,000+ Modules from the Python Package Index by Danial, Albert

“… A reference guide to setting up and managing a Python environment that integrates cleanly with MATLAB…”
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PyPore: a python toolbox for nanopore sequencing data handling by Semeraro, Roberto, Magi, Alberto

“… Results We developed PyPore, a three module python toolbox designed to handle raw FAST5 files from quality checking to alignment to a reference genome and to explore their features…”
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GraphIAST: A graphical user interface software for Ideal Adsorption Solution Theory (IAST) calculations by Dautzenberg, Ellen, van Hurne, Simon, Smulders, Maarten M.J., de Smet, Louis C.P.M.

“…Industrial exhaust gases have a strong environmental impact, including on global warming. Carbon dioxide (CO2) is a prominent example of such an exhaust gas…”
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BioModels—15 years of sharing computational models in life science by Malik-Sheriff, Rahuman S, Glont, Mihai, Nguyen, Tung V N, Tiwari, Krishna, Roberts, Matthew G, Xavier, Ashley, Vu, Manh T, Men, Jinghao, Maire, Matthieu, Kananathan, Sarubini, Fairbanks, Emma L, Meyer, Johannes P, Arankalle, Chinmay, Varusai, Thawfeek M, Knight-Schrijver, Vincent, Li, Lu, Dueñas-Roca, Corina, Dass, Gaurhari, Keating, Sarah M, Park, Young M, Buso, Nicola, Rodriguez, Nicolas, Hucka, Michael, Hermjakob, Henning

“…/), a repository for mathematical models, was established in 2005. The current BioModels platform allows submission of models encoded in diverse modelling formats, including SBML, CellML, PharmML, COMBINE archive, MATLAB, Mathematica, R, Python or C++…”
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