Search Results - modular python package*

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  1. 1

    PyFasma: an open-source, modular Python package for preprocessing and multivariate analysis of Raman spectroscopy data by Pavlou, Eleftherios, Kourkoumelis, Nikolaos

    ISSN: 1364-5528
    Published: England 07.07.2025
    Published in Analyst (London) (07.07.2025)
    “… We present PyFasma, an open-source Python package for Raman spectroscopy, integrating essential preprocessing tools…”
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    Journal Article
  2. 2

    mspacman: A modular python package for three-dimensional (3D) partial volume corrected particle characterization using X-ray computed tomography by Gupta, Shuvam

    ISSN: 2352-7110, 2352-7110
    Published: Elsevier B.V 01.09.2025
    Published in SoftwareX (01.09.2025)
    “…•Modular Python package for 3D CT particle characterization with partial volume correction…”
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    Journal Article
  3. 3

    pymodconn: A python package for developing modular sequence-to-sequence control-oriented deep neural networks by Chaudhary, Gaurav, Johra, Hicham, Georges, Laurent, Austbø, Bjørn

    ISSN: 2352-7110, 2352-7110
    Published: Elsevier 01.12.2023
    Published in SoftwareX (01.12.2023)
    “…This paper introduces ''pymodconn'', a comprehensive python package developed for constructing modular sequence-to-sequence control-oriented deep neural networks…”
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    Journal Article
  4. 4

    atomSmltr: a modular Python package to simulate laser cooling setups by Weill, Mateo, Bertoldi, Andrea, Dareau, Alexandre

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 18.02.2026
    Published in arXiv.org (18.02.2026)
    “…We introduce atomSmltr, a Python package for simulating laser cooling in complex magnetic field and laser beams geometries…”
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    Paper
  5. 5

    atomSmltr: a modular Python package to simulate laser cooling setups by Weill, Mateo, Bertoldi, Andrea, Dareau, Alexandre

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 25.11.2025
    Published in arXiv.org (25.11.2025)
    “…We introduce atomSmltr, a Python package for simulating laser cooling in complex magnetic field and laser beams geometries…”
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    Paper
  6. 6

    FluidSim: Modular, Object-Oriented Python Package for High-Performance CFD Simulations by Mohanan, Ashwin Vishnu, Bonamy, Cyrille, Linares, Miguel Calpe, Augier, Pierre

    ISSN: 2049-9647, 2049-9647
    Published: Ubiquity Press 26.04.2019
    Published in Journal of open research software (26.04.2019)
    “…The Python package fluidsim is introduced in this article as an extensible framework for Computational Fluid Mechanics (CFD) solvers…”
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    Journal Article
  7. 7

    DomainLab: A modular Python package for domain generalization in deep learning by Sun, Xudong, Feistner, Carla, Gossmann, Alexej, Schwarz, George, Rao, Muhammad Umer, Beer, Lisa, Rockenschaub, Patrick, Rahul Babu Shrestha, Gruber, Armin, Chen, Nutan, Sayedali Shetab Boushehri, Buettner, Florian, Marr, Carsten

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 21.03.2024
    Published in arXiv.org (21.03.2024)
    “… DomainLab is a modular Python package for training user specified neural networks with composable regularization loss terms…”
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    Paper
  8. 8

    QuPepFold: A python package for hybrid quantum-classical protein folding simulations with CVaR-optimized VQE by Uttarkar, Akshay, Niranjan, Vidya, Saxena, Amit, Kumar, Vinay

    ISSN: 1932-6203, 1932-6203
    Published: United States Public Library of Science 11.02.2026
    Published in PloS one (11.02.2026)
    “…), remains a formidable challenge for classical computation. We introduce QuPepFold, a modular Python package designed to democratize hybrid quantum-classical simulations…”
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    Journal Article
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    rhodent: A python package for analyzing real-time TDDFT response by Fojt, Jakub, Rossi, Tuomas P., Erhart, Paul

    ISSN: 0010-4655
    Published: Elsevier B.V 01.05.2026
    Published in Computer physics communications (01.05.2026)
    “…Real-time time-dependent density functional theory (rt-TDDFT) is a well-established method for studying the dynamic response of matter in the femtosecond or…”
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    Journal Article
  11. 11

    ProPythia: A Python package for protein classification based on machine and deep learning by Sequeira, Ana Marta, Lousa, Diana, Rocha, Miguel

    ISSN: 0925-2312, 1872-8286
    Published: Elsevier B.V 01.05.2022
    Published in Neurocomputing (Amsterdam) (01.05.2022)
    “…The field of protein data mining has been growing rapidly in the last years. To characterize proteins and determine their function from their amino acid…”
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    The EVcouplings Python framework for coevolutionary sequence analysis by Hopf, Thomas A, Green, Anna G, Schubert, Benjamin, Mersmann, Sophia, Schärfe, Charlotta P I, Ingraham, John B, Toth-Petroczy, Agnes, Brock, Kelly, Riesselman, Adam J, Palmedo, Perry, Kang, Chan, Sheridan, Robert, Draizen, Eli J, Dallago, Christian, Sander, Chris, Marks, Debora S

    ISSN: 1367-4803, 1367-4811, 1367-4811
    Published: England Oxford University Press 01.05.2019
    Published in Bioinformatics (Oxford, England) (01.05.2019)
    “…), and de novo prediction of structure and mutation effects. The combination of an easy to use, flexible command line interface and an underlying modular Python package…”
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  14. 14

    kMCpy: A python package to simulate transport properties in solids with kinetic Monte Carlo by Deng, Zeyu, Mishra, Tara P., Xie, Weihang, Saeed, Daanyal Ahmed, Gautam, Gopalakrishnan Sai, Canepa, Pieremanuele

    ISSN: 0927-0256, 1879-0801
    Published: Elsevier B.V 05.10.2023
    Published in Computational materials science (05.10.2023)
    “… Here, we present kMCpy, a lightweight, customizable, and modular python package to compute the ionic transport properties in crystalline materials using kMC…”
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    FluidSim: modular, object-oriented Python package for high-performance CFD simulations by Mohanan, Ashwin Vishnu, Bonamy, Cyrille, Miguel Calpe Linares, Augier, Pierre

    ISSN: 2331-8422
    Published: Ithaca Cornell University Library, arXiv.org 03.07.2018
    Published in arXiv.org (03.07.2018)
    “…The Python package fluidsim is introduced in this article as an extensible framework for Computational Fluid Mechanics (CFD) solvers…”
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    Paper
  17. 17

    ModeHunter: A Package for the Reductionist Analysis, Animation, and Application of Elastic Biomolecular Motion by Wriggers, Willy, Alshammari, Maytha, Stember, Joseph N, Stolzenberg, Sebastian, Metwally, Essam, Auer, Manfred, He, Jing, Weinstein, Harel

    ISSN: 1520-5207
    Published: United States 23.01.2025
    Published in The journal of physical chemistry. B (23.01.2025)
    “…ModeHunter is a modular Python software package for the simulation of 3D biophysical motion across spatial resolution scales using modal analysis of elastic networks…”
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  18. 18

    QuakeMigrate: a Modular, Open-Source Python Package for Automatic Earthquake Detection and Location by Winder, Tom, Bacon, Conor, Smith, Jonathan, Hudson, Thomas, Greenfield, Tim, White, Robert

    Published: Washington American Geophysical Union 16.01.2021
    “… QuakeMigrate is a new modular, open-source python package providing a framework to efficiently…”
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  19. 19

    CELL: a Python package for cluster expansion with a focus on complex alloys by Rigamonti, Santiago, Troppenz, Maria, Kuban, Martin, Hübner, Axel, Draxl, Claudia

    ISSN: 2057-3960, 2057-3960
    Published: London Nature Publishing Group UK 30.08.2024
    Published in npj computational materials (30.08.2024)
    “…We present the Python package CELL, which provides a modular approach to the cluster expansion (CE) method…”
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  20. 20

    SuperCCM: An Open Source Python Toolkit for Automated Quantification of Corneal Nerve Fibers in Confocal Microscopy Images by Qiao, Qincheng, Ren, Tongxin, Chen, Li, Hou, Xinguo

    ISSN: 2164-2591, 2164-2591
    Published: United States Association for Research in Vision and Ophthalmology 18.11.2025
    Published in Translational vision science & technology (18.11.2025)
    “… Most deep learning-based models are limited to single tasks and are rarely open source. This paper proposes SuperCCM, a fully automated, modular, open source Python package, for the comprehensive analysis of CCM images…”
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    Journal Article