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    DRACON: disconnected graph neural network for atom mapping in chemical reactions Autor Nikitin, Filipp, Isayev, Olexandr, Strijov, Vadim

    ISSN: 1463-9084, 1463-9084
    Vydáno: 25.11.2020
    “…Machine learning solved many challenging problems in computer-assisted synthesis prediction (CASP). We formulate a reaction prediction problem in terms of…”
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    Polar Dust, Nuclear Obscuration, and IR SED Diversity in Type-1 AGNs The AGN template library developed in this work can be obtained on github (https://github.com/karlan/AGN_templates) Autor Lyu, Jianwei, Rieke, George H.

    ISSN: 0004-637X, 1538-4357
    Vydáno: The American Astronomical Society 16.10.2018
    Vydáno v The Astrophysical journal (16.10.2018)
    “…Despite the hypothesized similar face-on viewing angles, the infrared emission of type-1 active galactic nuclei (AGNs) has diverse spectral energy distribution…”
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    Interfacial nanomechanical heterogeneity of the E. coli biofilm matrix Autor Kreis, Christian Titus, Sullan, Ruby May A

    ISSN: 2040-3372, 2040-3372
    Vydáno: England 20.08.2020
    Vydáno v Nanoscale (20.08.2020)
    “…The interface between bacterial biofilms and their environment plays a vital role in the recalcitrance of biofilms to biological, chemical, and mechanical…”
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    Debris of Asteroid Disruptions Close to the Sun∗ ∗ Data and codes that generate the figures and main results of this work are publicly available on Zenodo (doi:10.5281/zenodo.2547298) and GitHub (https://github.com/Yeqzids/near-sun-disruptions) Autor Ye, Quanzhi, Granvik, Mikael

    ISSN: 0004-637X, 1538-4357
    Vydáno: The American Astronomical Society 11.03.2019
    Vydáno v The Astrophysical journal (11.03.2019)
    “…The under-abundance of asteroids on orbits with small perihelion distances suggests that thermally driven disruption may be an important process in the removal…”
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    Rising from Ashes or Dying Flash? The Mega Outburst of Small Comet 289P/Blanpain in 2013∗ ∗ Data and codes that generate the figures of this work are available on Zenodo (10.5281/zenodo.3238650) and on GitHub (https://github.com/Yeqzids/blanpain-2013) Autor Ye, Quanzhi, Clark, David L.

    ISSN: 2041-8205, 2041-8213
    Vydáno: The American Astronomical Society 17.06.2019
    Vydáno v Astrophysical journal. Letters (17.06.2019)
    “…Jupiter-family comet 289P/Blanpain was first discovered in 1819 and was then lost for ∼200 years, only to be rediscovered in 2003 as a small, weakly active…”
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    Quantum Deep Descriptor: Physically Informed Transfer Learning from Small Molecules to Polymers Autor Tsubaki, Masashi, Mizoguchi, Teruyasu

    ISSN: 1549-9626, 1549-9626
    Vydáno: 14.12.2021
    “…In this study, we propose a physically informed transfer learning approach for materials informatics (MI) using a quantum deep descriptor (QDD) obtained from…”
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    Image Processing and Machine Learning for Automated Identification of Chemo-/Biomarkers in Chromatography-Mass Spectrometry Autor Jirayupat, Chaiyanut, Nagashima, Kazuki, Hosomi, Takuro, Takahashi, Tsunaki, Tanaka, Wataru, Samransuksamer, Benjarong, Zhang, Guozhu, Liu, Jiangyang, Kanai, Masaki, Yanagida, Takeshi

    ISSN: 1520-6882, 1520-6882
    Vydáno: 09.11.2021
    Vydáno v Analytical chemistry (Washington) (09.11.2021)
    “…We present a method named NPFimg, which automatically identifies multivariate chemo-/biomarker features of analytes in chromatography-mass spectrometry (MS)…”
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    A large-scale analysis of bioinformatics code on GitHub Autor Russell, Pamela H., Johnson, Rachel L., Ananthan, Shreyas, Harnke, Benjamin, Carlson, Nichole E.

    ISSN: 1932-6203, 1932-6203
    Vydáno: United States Public Library of Science 31.10.2018
    Vydáno v PloS one (31.10.2018)
    “… communities, and software impact. To investigate these issues, we curated a list of 1,720 bioinformatics repositories on GitHub through their mention in peer-reviewed bioinformatics articles…”
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    Ten Simple Rules for Taking Advantage of Git and GitHub Autor Perez-Riverol, Yasset, Gatto, Laurent, Wang, Rui, Sachsenberg, Timo, Uszkoreit, Julian, Leprevost, Felipe da Veiga, Fufezan, Christian, Ternent, Tobias, Eglen, Stephen J., Katz, Daniel S., Pollard, Tom J., Konovalov, Alexander, Flight, Robert M., Blin, Kai, Vizcaíno, Juan Antonio

    ISSN: 1553-7358, 1553-734X, 1553-7358
    Vydáno: United States Public Library of Science 14.07.2016
    Vydáno v PLoS computational biology (14.07.2016)
    “…), NSF grant number 1252893 (http://www.nsf.gov/), and Novo Nordisk Foundation (http://www.novonordiskfonden.dk/en). GitHub relies, at its core, on the well-known…”
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    A tutorial on conducting genome‐wide association studies: Quality control and statistical analysis Autor Marees, Andries T., Kluiver, Hilde, Stringer, Sven, Vorspan, Florence, Curis, Emmanuel, Marie‐Claire, Cynthia, Derks, Eske M.

    ISSN: 1049-8931, 1557-0657, 1557-0657, 1234-988X
    Vydáno: United States John Wiley & Sons, Inc 01.06.2018
    “… This tutorial aims to provide a guideline for conducting genetic analyses. Methods We discuss and explain key concepts and illustrate how to conduct GWAS using example scripts provided through GitHub (https…”
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    Mime: A flexible machine-learning framework to construct and visualize models for clinical characteristics prediction and feature selection Autor Liu, Hongwei, Zhang, Wei, Zhang, Yihao, Adegboro, Abraham Ayodeji, Fasoranti, Deborah Oluwatosin, Dai, Luohuan, Pan, Zhouyang, Liu, Hongyi, Xiong, Yi, Li, Wang, Peng, Kang, Wanggou, Siyi, Li, Xuejun

    ISSN: 2001-0370, 2001-0370
    Vydáno: Netherlands Elsevier B.V 01.12.2024
    “…The widespread use of high-throughput sequencing technologies has revolutionized the understanding of biology and cancer heterogeneity. Recently, several…”
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    GitHubInclusifier: Finding and Fixing Non-Inclusive Language in GitHub Repositories Autor Todd, Liam, Grundy, John, Treude, Christoph

    ISSN: 2574-1934
    Vydáno: ACM 14.04.2024
    “… The tool and evaluation data are available from: https://github.com/LiamTodd/github-inclusifier The demo video is available at: https://www.youtube.com/watch?v=1z1QKdQg…”
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    HyperCRX 2.0: A Comprehensive and Automated Tool for Empowering GitHub Insights Autor Wang, Yantong, Wang, Wei, Xia, Xiaoya, Tang, Yenan, Bi, Fenglin, Han, Fanyu, Peng, Jiaheng, Zhao, Shengyu, You, Lan

    ISSN: 2574-1934
    Vydáno: IEEE 27.04.2025
    “…HyperCRX is a browser extension designed for the GitHub platform, aimed at enhancing the open-source experience by providing in-depth insights into projects and developers…”
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    A user material approach for the solution of multi-field problems in Abaqus: Theoretical foundations, gradient-enhanced damage mechanics and thermo-mechanical coupling Autor Sobisch, Lennart, Kaiser, Tobias, Furlan, Tim, Menzel, Andreas

    ISSN: 0168-874X
    Vydáno: Elsevier B.V 01.05.2024
    “…The solution of multi-field problems and the numerical implementation by means of the finite element method constitute a sophisticated part of the…”
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    A catalogue of game-specific anti-patterns based on GitHub and Game Development Stack Exchange Autor Agrahari, Vartika, Shanbhag, Shriram, Chimalakonda, Sridhar, Rao, A. Eashaan

    ISSN: 0164-1212, 1873-1228
    Vydáno: Elsevier Inc 01.10.2023
    Vydáno v The Journal of systems and software (01.10.2023)
    “…With the ever-increasing use of games, game developers are expected to write efficient code and support several aspects such as security, maintainability, and…”
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    Introducing GloRiSe – a global database on river sediment composition Autor Müller, Gerrit, Middelburg, Jack J., Sluijs, Appy

    ISSN: 1866-3516, 1866-3508, 1866-3516
    Vydáno: Katlenburg-Lindau Copernicus GmbH 29.07.2021
    Vydáno v Earth system science data (29.07.2021)
    “…Rivers transport dissolved and solid loads from terrestrial realms to the oceans and between inland reservoirs, representing major mass fluxes on Earth's…”
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    GitQ- Towards Using Badges as Visual Cues for GitHub Projects Autor Manasa Venigalla, Akhila Sri, Boyalakuntla, Kowndinya, Chimalakonda, Sridhar

    ISSN: 2643-7171
    Vydáno: ACM 01.05.2022
    “…GitHub hosts millions of software repositories, facilitating developers to contribute to many projects in multiple ways…”
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    decoupleR: ensemble of computational methods to infer biological activities from omics data Autor Badia-i-Mompel, Pau, Vélez Santiago, Jesús, Braunger, Jana, Geiss, Celina, Dimitrov, Daniel, Müller-Dott, Sophia, Taus, Petr, Dugourd, Aurelien, Holland, Christian H, Ramirez Flores, Ricardo O, Saez-Rodriguez, Julio

    ISSN: 2635-0041, 2635-0041
    Vydáno: England Oxford University Press 2022
    Vydáno v Bioinformatics advances (2022)
    “…Summary Many methods allow us to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality…”
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