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Extragalactic Magnetism with SOFIA (Legacy Program). I. The Magnetic Field in the Multiphase Interstellar Medium of M51 The SOFIA Legacy Group for Magnetic Fields in Galaxies software repository is available at https://github.com/galmagfields/hawc via the official project website, http://galmagfields.com/, and Zenodo/GitHub, https://doi.org/10.5281/zenodo.5116134 by Borlaff, Alejandro S., Lopez-Rodriguez, Enrique, Beck, Rainer, Stepanov, Rodion, Ntormousi, Eva, Hughes, Annie, Tassis, Konstantinos, Marcum, Pamela M., Grosset, Lucas, Beckman, John E., Proudfit, Leslie, Clark, Susan E., Díaz-Santos, Tanio, Mao, Sui Ann, Reach, William T., Roman-Duval, Julia, Subramanian, Kandaswamy, Tram, Le Ngoc, Zweibel, Ellen G., Dale, Daniel

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Interfacial nanomechanical heterogeneity of the E. coli biofilm matrix by Kreis, Christian Titus, Sullan, Ruby May A

“…The interface between bacterial biofilms and their environment plays a vital role in the recalcitrance of biofilms to biological, chemical, and mechanical…”
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Polar Dust, Nuclear Obscuration, and IR SED Diversity in Type-1 AGNs The AGN template library developed in this work can be obtained on github (https://github.com/karlan/AGN_templates) by Lyu, Jianwei, Rieke, George H.

“…Despite the hypothesized similar face-on viewing angles, the infrared emission of type-1 active galactic nuclei (AGNs) has diverse spectral energy distribution…”
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Debris of Asteroid Disruptions Close to the Sun∗ ∗ Data and codes that generate the figures and main results of this work are publicly available on Zenodo (doi:10.5281/zenodo.2547298) and GitHub (https://github.com/Yeqzids/near-sun-disruptions) by Ye, Quanzhi, Granvik, Mikael

“…The under-abundance of asteroids on orbits with small perihelion distances suggests that thermally driven disruption may be an important process in the removal…”
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Machine learning dihydrogen activation in the chemical space surrounding Vaska's complex (The dataset is publicly available at Dataverse and GitHub (https://doi.org/10.5683/SP2/CJS7QA and https://github.com/pascalfriederich/vaskas-space, respectively). It includes the xyz files containing the coordinates of all complexes and transition states and the calculated energies and features used to train our machine learning models in a .csv file.) by Friederich, Pascal, Gabriel dos Passos Gomes, De Bin, Riccardo, Aspuru-Guzik, Alán, Balcells, David

“…Homogeneous catalysis using transition metal complexes is ubiquitously used for organic synthesis, as well as technologically relevant in applications such as…”
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Rising from Ashes or Dying Flash? The Mega Outburst of Small Comet 289P/Blanpain in 2013∗ ∗ Data and codes that generate the figures of this work are available on Zenodo (10.5281/zenodo.3238650) and on GitHub (https://github.com/Yeqzids/blanpain-2013) by Ye, Quanzhi, Clark, David L.

“…Jupiter-family comet 289P/Blanpain was first discovered in 1819 and was then lost for ∼200 years, only to be rediscovered in 2003 as a small, weakly active…”
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A tutorial on conducting genome‐wide association studies: Quality control and statistical analysis by Marees, Andries T., Kluiver, Hilde, Stringer, Sven, Vorspan, Florence, Curis, Emmanuel, Marie‐Claire, Cynthia, Derks, Eske M.

“… This tutorial aims to provide a guideline for conducting genetic analyses. Methods We discuss and explain key concepts and illustrate how to conduct GWAS using example scripts provided through GitHub (https…”
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Mime: A flexible machine-learning framework to construct and visualize models for clinical characteristics prediction and feature selection by Liu, Hongwei, Zhang, Wei, Zhang, Yihao, Adegboro, Abraham Ayodeji, Fasoranti, Deborah Oluwatosin, Dai, Luohuan, Pan, Zhouyang, Liu, Hongyi, Xiong, Yi, Li, Wang, Peng, Kang, Wanggou, Siyi, Li, Xuejun

“…The widespread use of high-throughput sequencing technologies has revolutionized the understanding of biology and cancer heterogeneity. Recently, several…”
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A large-scale analysis of bioinformatics code on GitHub by Russell, Pamela H., Johnson, Rachel L., Ananthan, Shreyas, Harnke, Benjamin, Carlson, Nichole E.

“… communities, and software impact. To investigate these issues, we curated a list of 1,720 bioinformatics repositories on GitHub through their mention in peer-reviewed bioinformatics articles…”
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Ten Simple Rules for Taking Advantage of Git and GitHub by Perez-Riverol, Yasset, Gatto, Laurent, Wang, Rui, Sachsenberg, Timo, Uszkoreit, Julian, Leprevost, Felipe da Veiga, Fufezan, Christian, Ternent, Tobias, Eglen, Stephen J., Katz, Daniel S., Pollard, Tom J., Konovalov, Alexander, Flight, Robert M., Blin, Kai, Vizcaíno, Juan Antonio

“…), NSF grant number 1252893 (http://www.nsf.gov/), and Novo Nordisk Foundation (http://www.novonordiskfonden.dk/en). GitHub relies, at its core, on the well-known…”
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GitHubInclusifier: Finding and Fixing Non-Inclusive Language in GitHub Repositories by Todd, Liam, Grundy, John, Treude, Christoph

“… The tool and evaluation data are available from: https://github.com/LiamTodd/github-inclusifier The demo video is available at: https://www.youtube.com/watch?v=1z1QKdQg…”
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A user material approach for the solution of multi-field problems in Abaqus: Theoretical foundations, gradient-enhanced damage mechanics and thermo-mechanical coupling by Sobisch, Lennart, Kaiser, Tobias, Furlan, Tim, Menzel, Andreas

“…The solution of multi-field problems and the numerical implementation by means of the finite element method constitute a sophisticated part of the…”
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decoupleR: ensemble of computational methods to infer biological activities from omics data by Badia-i-Mompel, Pau, Vélez Santiago, Jesús, Braunger, Jana, Geiss, Celina, Dimitrov, Daniel, Müller-Dott, Sophia, Taus, Petr, Dugourd, Aurelien, Holland, Christian H, Ramirez Flores, Ricardo O, Saez-Rodriguez, Julio

“…Summary Many methods allow us to extract biological activities from omics data using information from prior knowledge resources, reducing the dimensionality…”
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DeepPROTACs is a deep learning-based targeted degradation predictor for PROTACs by Li, Fenglei, Hu, Qiaoyu, Zhang, Xianglei, Sun, Renhong, Liu, Zhuanghua, Wu, Sanan, Tian, Siyuan, Ma, Xinyue, Dai, Zhizhuo, Yang, Xiaobao, Gao, Shenghua, Bai, Fang

“…The rational design of PROTACs is difficult due to their obscure structure-activity relationship. This study introduces a deep neural network model -…”
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MetaboLights: a resource evolving in response to the needs of its scientific community by Haug, Kenneth, Cochrane, Keeva, Nainala, Venkata Chandrasekhar, Williams, Mark, Chang, Jiakang, Jayaseelan, Kalai Vanii, O’Donovan, Claire

“…Abstract MetaboLights is a database for metabolomics studies, their raw experimental data and associated metadata. The database is cross-species and…”
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Nonparametric IPSS: fast, flexible feature selection with false discovery control by Melikechi, Omar, Dunson, David B, Miller, Jeffrey W

“…Feature selection is a critical task in machine learning and statistics. However, existing feature selection methods either (i) rely on parametric methods such…”
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MetaCycle: an integrated R package to evaluate periodicity in large scale data by Wu, Gang, Anafi, Ron C., Hughes, Michael E., Kornacker, Karl, Hogenesch, John B.

“…/index.html ) and GitHub ( https://github.com/gangwug/MetaCycle ). Contact:  hogenesch@gmail.com Supplementary information:  Supplementary data are available at Bioinformatics online…”
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GOATOOLS: A Python library for Gene Ontology analyses by Klopfenstein, D. V., Zhang, Liangsheng, Pedersen, Brent S., Ramírez, Fidel, Warwick Vesztrocy, Alex, Naldi, Aurélien, Mungall, Christopher J., Yunes, Jeffrey M., Botvinnik, Olga, Weigel, Mark, Dampier, Will, Dessimoz, Christophe, Flick, Patrick, Tang, Haibao

“…The biological interpretation of gene lists with interesting shared properties, such as up- or down-regulation in a particular experiment, is typically…”
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HyperCRX 2.0: A Comprehensive and Automated Tool for Empowering GitHub Insights by Wang, Yantong, Wang, Wei, Xia, Xiaoya, Tang, Yenan, Bi, Fenglin, Han, Fanyu, Peng, Jiaheng, Zhao, Shengyu, You, Lan

“…HyperCRX is a browser extension designed for the GitHub platform, aimed at enhancing the open-source experience by providing in-depth insights into projects and developers…”
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iSeqQC: a tool for expression-based quality control in RNA sequencing by Kumar, Gaurav, Ertel, Adam, Feldman, George, Kupper, Joan, Fortina, Paolo

“… It can be utilized through command-line (Github: https://github.com/gkumar09/iSeqQC ) or web-interface ( http://cancerwebpa.jefferson.edu…”
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