Výsledky vyhledávání - dynamic code analysis of python (progress OR process)*

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics Autor Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.

“… MASSpy adds dynamic modeling tools to the COnstraint-Based Reconstruction and Analysis Python (COBRApy…”
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods Autor Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli

“…Background Variability in datasets is not only the product of biological processes…”
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Efficient Space–Time Reduced Order Model for Linear Dynamical Systems in Python Using Less than 120 Lines of Code Autor Kim, Youngkyu, Wang, Karen, Choi, Youngsoo

“…A classical reduced order model (ROM) for dynamical problems typically involves only the spatial reduction of a given problem…”
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Deeptime: a Python library for machine learning dynamical models from time series data Autor Hoffmann, Moritz, Scherer, Martin, Hempel, Tim, Mardt, Andreas, de Silva, Brian, Husic, Brooke E, Klus, Stefan, Wu, Hao, Kutz, Nathan, Brunton, Steven L, Noé, Frank

“… Deeptime is a general purpose Python library offering various tools to estimate dynamical models based on time-series data including conventional linear learning methods, such as Markov state models (MSMs…”
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Dynamic Generation of Python Bindings for HPC Kernels Autor Zhu, Steven, AlAwar, Nader, Erez, Mattan, Gligoric, Milos

“… A recent trend among scientists-prototyping applications in dynamic languages such as Python-created a gap between the applications and existing HPKs…”
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PyGEE-SWToolbox: A Python Jupyter Notebook Toolbox for Interactive Surface Water Mapping and Analysis Using Google Earth Engine Autor Owusu, Collins, Snigdha, Nusrat J., Martin, Mackenzie T., Kalyanapu, Alfred J.

“… challenges. PyGEE-SWToolbox is a freely available Google Earth Engine-enabled open-source toolbox developed with Python to be run in Jupyter Notebooks that provides an easy-to-use graphical user interface (GUI…”
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3DDA: A Novel Python Toolkit to Analyze 3D‐Dynamic Contact Angles from Molecular Dynamics Simulations Autor Maslov, Andrea, Tiwari, Manish K., Seveno, David

“… Herein, 3DDA, a Python‐based code that uses the 3D droplet geometry to determine contact angles and analyze dynamic changes during spreading processes at the nanoscale, is presented…”
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CRYSTALpytools: A Python infrastructure for the Crystal code Autor Camino, Bruno, Zhou, Huanyu, Ascrizzi, Eleonora, Boccuni, Alberto, Bodo, Filippo, Cossard, Alessandro, Mitoli, Davide, Ferrari, Anna Maria, Erba, Alessandro, Harrison, Nicholas M.

“…CRYSTALpytools is an open source Python project available on GitHub that implements a user-friendly interface to the Crystal code for quantum-mechanical condensed matter simulations…”
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Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals Autor Combrisson, Etienne, Nest, Timothy, Brovelli, Andrea, Ince, Robin A. A., Soto, Juan L. P., Guillot, Aymeric, Jerbi, Karim

“… In particular, there is accumulating evidence that phase-amplitude coupling (PAC), a specific form of cross-frequency interaction, plays a key role in numerous cognitive processes…”
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PyCDFT: A Python package for constrained density functional theory Autor Ma, He, Wang, Wennie, Kim, Siyoung, Cheng, Man‐Hin, Govoni, Marco, Galli, Giulia

“…‐principles molecular dynamics code, Qbox, and we benchmark its accuracy by computing the electronic coupling between diabatic states for a set of organic molecules…”
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A Python-based stochastic library for assessing geothermal power potential using the volumetric method in a liquid-dominated reservoir Autor Pocasangre, Carlos, Fujimitsu, Yasuhiro

“…•A Python-based stochastic library is presented for assessing geothermal potential…”
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Python open-source signal processing and modeling/simulation for scientific research in structural dynamics—A review Autor Slavič, Janko, Zaletelj, Klemen, Gorjup, Domen, Pasca, Dag Pasquale, Aloisio, Angelo, Kvåle, Knut Andreas, Frøseth, Gunnstein Thomas, Weijtjens, Wout, Mujtaba, Ahmed, Česnik, Martin, Zorman, Aleš, Tsialiamanis, George, Tomac, Ivan, Ritto, Thiago G., Ocepek, Domen, Rohe, Dan, Silva, Olavo M., Masmeijer, Thijs C.P., Čufar, Krištof, Bregar, Tomaž, Kodrič, Miha, El Mahmoudi, Ahmed, Pogačar, Miha, Trainotti, Francesco, Göldeli, Mert, Čepon, Gregor, Timbó, Raphael, Cavallini, Aldemir A., Costa, Vinicius T., Santos, Jéssica G.F., Hughes, Aidan J., Vargas, Jacson G., Fernandes, André, Rixen, Daniel J., Worden, Keith, Boltežar, Miha

“… Avoiding duplication of effort leads to faster progress and greater societal benefit. The Python programming language provides readable code and is highly collaborative, leading to a large user community…”
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GraphPyRec: A novel graph-based approach for fine-grained Python code recommendation Autor Zong, Xing, Zheng, Shang, Zou, Haitao, Yu, Hualong, Gao, Shang

“… Significant progress has been made in code recommendation for static languages in recent years, but it remains challenging for dynamic languages like Python as accurately determining data flows…”
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Discovering Stochastic Dynamical Equations from Ecological Time Series Data Autor Nabeel, Arshed, Karichannavar, Ashwin, Palathingal, Shuaib, Jhawar, Jitesh, Brückner, David B, Raj M, Danny, Guttal, Vishwesha

“…AbstractTheoretical studies have shown that stochasticity can affect the dynamics of ecosystems in counterintuitive ways…”
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Glycosylator: a Python framework for the rapid modeling of glycans Autor Lemmin, Thomas, Soto, Cinque

“… The covalent linkage of a carbohydrate to the nitrogen atom of an asparagine, a process referred to as N- linked glycosylation, plays an important role in the physiology of many living organisms…”
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PyCHAM (v2.1.1): a Python box model for simulating aerosol chambers Autor O'Meara, Simon Patrick, Xu, Shuxuan, Topping, David, Alfarra, M. Rami, Capes, Gerard, Lowe, Douglas, Shao, Yunqi, McFiggans, Gordon

“…In this paper the CHemistry with Aerosol Microphysics in Python (PyCHAM) box model software for aerosol chambers is described and assessed against benchmark simulations for accuracy…”
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Verification of a Python-based TRANsport Simulation Environment for density-driven fluid flow and coupled transport of heat and chemical species Autor Kempka, Thomas

“…Numerical simulation has become an inevitable tool for improving the understanding on coupled processes in the geological subsurface and its utilisation…”
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SuperflexPy 1.3.0: an open-source Python framework for building, testing, and improving conceptual hydrological models Autor Dal Molin, Marco, Kavetski, Dmitri, Fenicia, Fabrizio

“…Catchment-scale hydrological models are widely used to represent and improve our understanding of hydrological processes and to support operational water resource management…”
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WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data Autor Yang, Darian T, Chong, Lillian T

“… Here, we present the WEDAP Python package for simplifying the analysis of data generated from either conventional MD simulations or the weighted ensemble…”
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Constructing and analysing dynamic models with modelbase v1.2.3: a software update Autor van Aalst, Marvin, Ebenhöh, Oliver, Matuszyńska, Anna

“…Background Computational mathematical models of biological and biomedical systems have been successfully applied to advance our understanding of various regulatory processes, metabolic fluxes, effects…”
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