Výsledky vyhľadávania - computing algorithms and (((bioinformation OR bioinformation) OR bioinformatika) OR informatics)

Using a stacked ensemble learning framework to predict modulators of protein–protein interactions Autor Gao, Mengyao, Zhao, Lingling, Zhang, Zitong, Wang, Junjie, Wang, Chunyu

“… In this study, we developed a stacking ensemble computational framework, SELPPI, based on a genetic algorithm and tree-based machine learning method for effectively predicting new modulators targeting protein…”
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classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes Autor Quinn, Gerard P., Sessler, Tamas, Ahmaderaghi, Baharak, Lambe, Shauna, VanSteenhouse, Harper, Lawler, Mark, Wappett, Mark, Seligmann, Bruce, Longley, Daniel B., McDade, Simon S.

“… However, assigning samples to these subtypes and other transcriptionally inferred predictions is time consuming and requires significant bioinformatics experience…”
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Bioinformatics: the machine learning approach Autor Baldi, Pierre, Brunak, Søren

“…A guide to machine learning approaches and their application to the analysis of biological data…”
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A Novel Sequence-Based Method of Predicting Protein DNA-Binding Residues, Using a Machine Learning Approach Autor Cai, Yudong, Shanghai University, Shanghai, People's Republic of China, He, ZhiSong, Zhejiang University, ZheJiang, People's Republic of China, Shi, Xiaohe, Chinese Academy of Sciences and Shanghai Jiao Tong University School of Medicine, People's Republic of China, Kong, Xiangying, Chinese Academy of Sciences and Shanghai Jiao Tong University School of Medicine, People's Republic of China, Gu, Lei, Fraunhofer Institute for Algorithms and Scientific Computing, Germany, Xie, Lu, Shanghai Center for Bioinformation Technology, Shanghai, People's Republic of China

“…Protein-DNA interactions play an essential role in transcriptional regulation, DNA repair, and many vital biological processes. The mechanism of protein-DNA…”
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Differentially Private Asynchronous Federated Learning for Mobile Edge Computing in Urban Informatics Autor Lu, Yunlong, Huang, Xiaohong, Dai, Yueyue, Maharjan, Sabita, Zhang, Yan

“…Driven by technologies such as mobile edge computing and 5G, recent years have witnessed the rapid development of urban informatics, where a large amount of data is generated…”
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New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics Autor Mokhtari, Majid, Khoshbakht, Samane, Ziyaei, Kobra, Akbari, Mohammad Esmaeil, Moravveji, Sayyed Sajjad

“…s. This new field employs the principles of quantum mechanics, quantum algorithms, and quantum computing to solve complex problems in molecular biology, drug design, and protein folding…”
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Accurate mass measurements in proteomics Autor Liu, Tao, Belov, Mikhail E, Jaitly, Navdeep, Qian, Wei-Jun, Smith, Richard D

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Bioinformatics analysis of the epitope regions for norovirus capsid protein Autor Chen, Liping, Wu, Di, Ji, Lei, Wu, Xiaofang, Xu, Deshun, Cao, Zhiwei, Han, Jiankang

“… Despite of the available monoclonal antibodies (MAbs) for different sub-genogroups, a comprehensive epitope analysis based on various bioinformatics technology…”
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Deep Learning Empowered Task Offloading for Mobile Edge Computing in Urban Informatics Autor Zhang, Ke, Zhu, Yongxu, Leng, Supeng, He, Yejun, Maharjan, Sabita, Zhang, Yan

“… Mobile edge computing (MEC) is a potential solution to alleviate the heavy burden on the devices…”
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Unipro UGENE: a unified bioinformatics toolkit Autor Okonechnikov, Konstantin, Golosova, Olga, Fursov, Mikhail

“…Unipro UGENE is a multiplatform open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data…”
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Molecular Computing and Bioinformatics Autor Liang, Xin, Zhu, Wen, Lv, Zhibin, Zou, Quan

“…Molecular computing and bioinformatics are two important interdisciplinary sciences that study molecules and computers…”
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Quantum computing in bioinformatics: a systematic review mapping Autor Nałęcz-Charkiewicz, Katarzyna, Charkiewicz, Kamil, Nowak, Robert M

“…Abstract The field of quantum computing (QC) is expanding, with efforts being made to apply it to areas previously covered by classical algorithms and methods…”
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Feature selection methods for big data bioinformatics: A survey from the search perspective Autor Wang, Lipo, Wang, Yaoli, Chang, Qing

“…This paper surveys main principles of feature selection and their recent applications in big data bioinformatic…”
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Open data and algorithms for open science in AI-driven molecular informatics Autor Brinkhaus, Henning Otto, Rajan, Kohulan, Schaub, Jonas, Zielesny, Achim, Steinbeck, Christoph

“…Recent years have seen a sharp increase in the development of deep learning and artificial intelligence-based molecular informatics…”
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ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community Autor Castrignanò, Tiziana, Gioiosa, Silvia, Flati, Tiziano, Cestari, Mirko, Picardi, Ernesto, Chiara, Matteo, Fratelli, Maddalena, Amente, Stefano, Cirilli, Marco, Tangaro, Marco Antonio, Chillemi, Giovanni, Pesole, Graziano, Zambelli, Federico

“… Modern biological experiments are increasingly becoming both data and computationally intensive and the wealth of publicly available biological data is introducing bioinformatics into the “Big Data” era…”
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Bioimage informatics: Investing in software usability is essential Autor Paul-Gilloteaux, Perrine

“… The rapid adoption of this software speaks to the importance of user experience to disseminate new methods of bioimage informatics…”
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Comparing different supervised machine learning algorithms for disease prediction Autor Uddin, Shahadat, Khan, Arif, Hossain, Md Ekramul, Moni, Mohammad Ali

“…Background Supervised machine learning algorithms have been a dominant method in the data mining field…”
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Guest Editorial: Special Issue on Theoretical Informatics Autor Kohayakawa, Yoshiharu, Miyazawa, Flávio K.

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SciPy 1.0: fundamental algorithms for scientific computing in Python Autor Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“…SciPy is an open-source scientific computing library for the Python programming language…”
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The Carbon Footprint of Bioinformatics Autor Grealey, Jason, Lannelongue, Loïc, Saw, Woei-Yuh, Marten, Jonathan, Méric, Guillaume, Ruiz-Carmona, Sergio, Inouye, Michael

“…Abstract Bioinformatic research relies on large-scale computational infrastructures which have a nonzero carbon footprint but so far, no study has quantified the environmental costs of bioinformatic…”
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