Search Results - computing algorithms and (((bioinformation OR bioinformatika) OR bioinformatika) OR informatics)

Bioinformatics: the machine learning approach by Baldi, Pierre, Brunak, Søren

“…A guide to machine learning approaches and their application to the analysis of biological data…”
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New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics by Mokhtari, Majid, Khoshbakht, Samane, Ziyaei, Kobra, Akbari, Mohammad Esmaeil, Moravveji, Sayyed Sajjad

“…s. This new field employs the principles of quantum mechanics, quantum algorithms, and quantum computing to solve complex problems in molecular biology, drug design, and protein folding…”
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Deep Learning Empowered Task Offloading for Mobile Edge Computing in Urban Informatics by Zhang, Ke, Zhu, Yongxu, Leng, Supeng, He, Yejun, Maharjan, Sabita, Zhang, Yan

“… Mobile edge computing (MEC) is a potential solution to alleviate the heavy burden on the devices…”
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Unipro UGENE: a unified bioinformatics toolkit by Okonechnikov, Konstantin, Golosova, Olga, Fursov, Mikhail

“…Unipro UGENE is a multiplatform open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data…”
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classifieR a flexible interactive cloud-application for functional annotation of cancer transcriptomes by Quinn, Gerard P., Sessler, Tamas, Ahmaderaghi, Baharak, Lambe, Shauna, VanSteenhouse, Harper, Lawler, Mark, Wappett, Mark, Seligmann, Bruce, Longley, Daniel B., McDade, Simon S.

“… However, assigning samples to these subtypes and other transcriptionally inferred predictions is time consuming and requires significant bioinformatics experience…”
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Molecular Computing and Bioinformatics by Liang, Xin, Zhu, Wen, Lv, Zhibin, Zou, Quan

“…Molecular computing and bioinformatics are two important interdisciplinary sciences that study molecules and computers…”
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Quantum computing in bioinformatics: a systematic review mapping by Nałęcz-Charkiewicz, Katarzyna, Charkiewicz, Kamil, Nowak, Robert M

“…Abstract The field of quantum computing (QC) is expanding, with efforts being made to apply it to areas previously covered by classical algorithms and methods…”
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Differentially Private Asynchronous Federated Learning for Mobile Edge Computing in Urban Informatics by Lu, Yunlong, Huang, Xiaohong, Dai, Yueyue, Maharjan, Sabita, Zhang, Yan

“…Driven by technologies such as mobile edge computing and 5G, recent years have witnessed the rapid development of urban informatics, where a large amount of data is generated…”
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Feature selection methods for big data bioinformatics: A survey from the search perspective by Wang, Lipo, Wang, Yaoli, Chang, Qing

“…This paper surveys main principles of feature selection and their recent applications in big data bioinformatic…”
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Open data and algorithms for open science in AI-driven molecular informatics by Brinkhaus, Henning Otto, Rajan, Kohulan, Schaub, Jonas, Zielesny, Achim, Steinbeck, Christoph

“…Recent years have seen a sharp increase in the development of deep learning and artificial intelligence-based molecular informatics…”
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ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community by Castrignanò, Tiziana, Gioiosa, Silvia, Flati, Tiziano, Cestari, Mirko, Picardi, Ernesto, Chiara, Matteo, Fratelli, Maddalena, Amente, Stefano, Cirilli, Marco, Tangaro, Marco Antonio, Chillemi, Giovanni, Pesole, Graziano, Zambelli, Federico

“… Modern biological experiments are increasingly becoming both data and computationally intensive and the wealth of publicly available biological data is introducing bioinformatics into the “Big Data” era…”
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Bioimage informatics: Investing in software usability is essential by Paul-Gilloteaux, Perrine

“… The rapid adoption of this software speaks to the importance of user experience to disseminate new methods of bioimage informatics…”
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Comparing different supervised machine learning algorithms for disease prediction by Uddin, Shahadat, Khan, Arif, Hossain, Md Ekramul, Moni, Mohammad Ali

“…Background Supervised machine learning algorithms have been a dominant method in the data mining field…”
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Guest Editorial: Special Issue on Theoretical Informatics by Kohayakawa, Yoshiharu, Miyazawa, Flávio K.

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SciPy 1.0: fundamental algorithms for scientific computing in Python by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“…SciPy is an open-source scientific computing library for the Python programming language…”
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The Carbon Footprint of Bioinformatics by Grealey, Jason, Lannelongue, Loïc, Saw, Woei-Yuh, Marten, Jonathan, Méric, Guillaume, Ruiz-Carmona, Sergio, Inouye, Michael

“…Abstract Bioinformatic research relies on large-scale computational infrastructures which have a nonzero carbon footprint but so far, no study has quantified the environmental costs of bioinformatic…”
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Interpreting Concept Learning in Cognitive Informatics and Granular Computing by Yao, Yiyu

“…Cognitive informatics and granular computing are two emerging fields of study concerning information and knowledge processing…”
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Cloud BioLinux: pre-configured and on-demand bioinformatics computing for the genomics community by Krampis, Konstantinos, Booth, Tim, Chapman, Brad, Tiwari, Bela, Bicak, Mesude, Field, Dawn, Nelson, Karen E

“…Background A steep drop in the cost of next-generation sequencing during recent years has made the technology affordable to the majority of researchers, but downstream bioinformatic analysis still…”
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Graphics processing units in bioinformatics, computational biology and systems biology by Nobile, Marco S, Cazzaniga, Paolo, Tangherloni, Andrea, Besozzi, Daniela

“…Abstract Several studies in Bioinformatics, Computational Biology and Systems Biology rely on the definition of physico-chemical or mathematical models of biological systems at different scales…”
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multiPhATE: bioinformatics pipeline for functional annotation of phage isolates by Ecale Zhou, Carol L, Malfatti, Stephanie, Kimbrel, Jeffrey, Philipson, Casandra, McNair, Katelyn, Hamilton, Theron, Edwards, Robert, Souza, Brian

“…) across a user-specified set of phage genomes. This tool incorporates a de novo phage gene calling algorithm and assigns putative functions to gene calls using protein-, virus- and phage-centric database…”
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