Search Results - Terminal restriction fragment length polymorphism data analysis

Terminal restriction fragment length polymorphism data analysis by Grant, Alastair, Ogilvie, Lesley A

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Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities by Blackwood, Christopher B, Marsh, Terry, Kim, Sang-Hoon, Paul, Eldor A

“…Terminal restriction fragment length polymorphism (T-RFLP) is a culture-independent method of obtaining a genetic fingerprint of the composition of a microbial community…”
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Characterization of gut microbiota profiles in coronary artery disease patients using data mining analysis of terminal restriction fragment length polymorphism: gut microbiota could be a diagnostic marker of coronary artery disease by Emoto, Takuo, Yamashita, Tomoya, Kobayashi, Toshio, Sasaki, Naoto, Hirota, Yushi, Hayashi, Tomohiro, So, Anna, Kasahara, Kazuyuki, Yodoi, Keiko, Matsumoto, Takuya, Mizoguchi, Taiji, Ogawa, Wataru, Hirata, Ken-ichi

“… Our aim of this study was to clarify the gut microbiota profiles in coronary artery disease patients using data mining analysis of terminal restriction fragment length polymorphism (T-RFLP…”
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Characterization of gut microbiota profiles by disease activity in patients with Crohn's disease using data mining analysis of terminal restriction fragment length polymorphisms by ANDOH, AKIRA, KOBAYASHI, TOSHIO, KUZUOKA, HIROYUKI, TSUJIKAWA, TOMOYUKI, SUZUKI, YASUO, HIRAI, FUMIHITO, MATSUI, TOSHIYUKI, NAKAMURA, SHIRO, MATSUMOTO, TAKAYUKI, FUJIYAMA, YOSHIHIDE

“…), remission-achieved (n=51) and remission-maintained (n=43) phases. Terminal restriction fragment length polymorphism (T-RFLP…”
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BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer–enzyme–sequence databases by Stres, Blaž, Tiedje, James M., Murovec, Boštjan

“…BEsTRF (Best Estimated T-RF) provides a standalone environment for analyzing primers-enzymes-gene section combinations used in terminal-restriction fragment length polymorphism (T-RFLP…”
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Characteristics of Gut Microbiota in Patients With Diabetes Determined by Data Mining Analysis of Terminal Restriction Fragment Length Polymorphisms by Nakamura, Yuta, Nagai, Yoshio, Kobayashi, Toshio, Furukawa, Kentaro, Oikawa, Yoichi, Shimada, Akira, Tanaka, Yasushi

“… fragment length polymorphism (T-RFLP) analysis and data mining. A cross-sectional study was performed at three centers…”
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Novel phylogenetic assignment database for terminal-restriction fragment length polymorphism analysis of human colonic microbiota by Matsumoto, Mitsuharu, Sakamoto, Mitsuo, Hayashi, Hidenori, Benno, Yoshimi

“… Terminal- restriction fragment length polymorphism (T-RFLP) analysis is suitable for a rapid comparison of complex bacterial communities…”
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Tools for T-RFLP data analysis using Excel by Fredriksson, Nils Johan, Hermansson, Malte, Wilén, Britt-Marie

“…Background Terminal restriction fragment length polymorphism (T-RFLP) analysis is a DNA-fingerprinting method that can be used for comparisons of the microbial community composition in a large number of samples…”
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Data mining analysis of terminal restriction fragment length polymorphism shows geographical differences in the human gut microbiota by ANDOH, AKIRA, KOBAYASHI, TOSHIO, KUZUOKA, HIROYUKI, SUZUKI, YASUO, MATSUI, TOSHIYUKI, NAKAMURA, SHIRO, MATSUMOTO, TAKAYUKI, FUJIYAMA, YOSHIHIDE, BAMBA, TADAO

“…Environmental factors are important for shaping the gut microbiota. In this study, terminal-restriction fragment length polymorphism (T-RFLP…”
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Botanical microbiomes on the cheap: Inexpensive molecular fingerprinting methods to study plant‐associated communities of bacteria and fungi by Johnston‐Monje, David, Lopez Mejia, Jessica

“…) and automated ribosomal intergenic spacer analysis (ARISA), and terminal restriction fragment length polymorphism (TRFLP…”
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Comparison between terminal-restriction fragment length polymorphism (T-RFLP) and quantitative culture for analysis of infants' gut microbiota by Sjöberg, Fei, Nowrouzian, Forough, Rangel, Ignacio, Hannoun, Charles, Moore, Edward, Adlerberth, Ingegerd, Wold, Agnes E.

“… by terminal-restriction fragment length polymorphism (T-RFLP). A database was constructed for direct identification of T-RFLP peaks by analysis of pure-culture bacteria and analysis of a limited number of samples…”
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Bacterial community and proteome analysis of fresh-cut lettuce as affected by packaging by Di Carli, Mariasole, De Rossi, Patrizia, Paganin, Patrizia, Del Fiore, Antonella, Lecce, Francesca, Capodicasa, Cristina, Bianco, Linda, Perrotta, Gaetano, Mengoni, Alessio, Bacci, Giovanni, Daroda, Lorenza, Dalmastri, Claudia, Donini, Marcello, Bevivino, Annamaria

“… Analysis of terminal-restriction fragment length polymorphism data indicated that bacterial communities changed with packaging…”
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The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities by Koopman, Margaret M, Fuselier, Danielle M, Hird, Sarah, Carstens, Bryan C

“… (automated ribosomal intergenic spacer analysis and terminal restriction fragment length polymorphism…”
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Rapid Estimation of Microbial Populations in Fish Samples by Using Terminal Restriction Fragment Length Polymorphism Analysis of 16S rDNA by Tanaka, Yuichiro, Takahashi, Hajime, Kitazawa, Nao, Kimura, Bon

“…A rapid system using terminal restriction fragment length polymorphism (T-RFLP) analysis targeting 16S rDNA is described for microbial population analysis in edible fish samples…”
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FragMatch--a program for the analysis of DNA fragment data by Saari, T. A, Saari, S. K, Campbell, C. D, Alexander, I. J, Anderson, I. C

“… The program has a user-friendly Windows interface and was primarily designed for the analysis of fragment data derived from terminal restriction fragment length polymorphism analysis…”
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Seasonal diversity of planktonic protists in Southwestern Alberta rivers over a 1-year period as revealed by terminal restriction fragment length polymorphism and 18S rRNA gene library analyses by Thomas, Matthew C, Selinger, L Brent, Inglis, G Douglas

“…) over a 1-year period. Nonmetric multidimensional scaling analysis of terminal restriction fragment length polymorphism (T-RFLP…”
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Spatial and temporal variability of bacterial communities within a combined sewer system by Jensen, Henriette Stokbro, Sekar, Raju, Shepherd, Will J., Osborn, Andrew M., Tait, Simon, Biggs, Catherine A.

“… The bacterial communities were characterized by 16S rRNA gene‐targeted terminal restriction fragment length polymorphism analysis…”
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Conservation and Diversity of Seed Associated Endophytes in Zea across Boundaries of Evolution, Ethnography and Ecology by Johnston-Monje, David, Raizada, Manish N.

“… fragment length polymorphism (TRFLP) of 16S rDNA. Principle component analysis of TRFLP data showed that seed endophyte community composition varied in relation to plant host phylogeny…”
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Quantitative analysis of Terminal Restriction Fragment Length Polymorphism (T-RFLP) microbial community profiles: peak height data showed to be more reproducible than peak area by Caffaro-Filho, Roberto A., Fantinatti-Garboggini, Fabiana, Durrant, Lucia R.

“…Terminal Restriction Fragment Length Polymorphism (T-RFLP) is a culture-independent fingerprinting method for microbial community analysis…”
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Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis by Marsh, T L, Saxman, P, Cole, J, Tiedje, J

“… html) that facilitates microbial community analysis using terminal restriction fragment length polymorphism of 16S ribosomal DNA…”
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