Výsledky vyhledávání - Microarray Data Analysis and Gene Expression Profiling*

Analysis of Proposed and Traditional Boosting Algorithm with Standalone Classification Methods for Classifying Gene Expresssion Microarray Data Using a Reject Option Autor Adil Aslam Mir, Lal Hussain, Muhammad Waseem, Amjad Aldweesh, Saim Rasheed, El Sayed Yousef, Malik Sajjad Ahmed Nadeem, Elsayed Tag Eldin

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Use of relevancy and complementary information for discriminatory gene selection from high-dimensional gene expression data Autor Nazmul Haque, Sadia Sharmin, Amin Ahsan Ali, Abu Ashfaqur Sajib, Mohammad Shoyaib

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Validation of genotype imputation in Southeast Asian populations and the effect of single nucleotide polymorphism annotation on imputation outcome Autor Harald Grove, Prida Malasit, Prapat Suriyaphol, Nattaya Tangthawornchaikul, Anavaj Sakuntabhai, Worachart Lert-itthiporn, Fumihiko Matsuda, Bhoom Suktitipat

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Genealyzer: web application for the analysis and comparison of gene expression data Autor Lietz, Kristina, Saremi, Babak, Wiese, Lena

“… Microarray data of gene expression experiments is still commonly used and widely available for retrospective analyses…”
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Repeatability of published microarray gene expression analyses Autor Ioannidis, John P A, Allison, David B, Ball, Catherine A, Coulibaly, Issa, Cui, Xiangqin, Culhane, Aedín C, Falchi, Mario, Furlanello, Cesare, Game, Laurence, Jurman, Giuseppe, Mangion, Jon, Mehta, Tapan, Nitzberg, Michael, Page, Grier P, Petretto, Enrico, van Noort, Vera

“… Given the complexity of microarray-based gene expression studies, guidelines encourage transparent design and public data availability…”
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Analysis of gene expression profile microarray data in complex regional pain syndrome Autor Tan, Wulin, Song, Yiyan, Mo, Chengqiang, Jiang, Shuangjian, Wang, Zhongxing

“…) using bioinformatics analysis. The gene expression profiling microarray data, GSE47603, which included peripheral blood samples from 4 patients with CRPS and 5 healthy controls, was obtained from the Gene Expression Omnibus (GEO) database…”
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Microarray gene expression profiling in colorectal (HCT116) and hepatocellular (HepG2) carcinoma cell lines treated with Melicope ptelefolia leaf extract reveals transcriptome profiles exhibiting anticancer activity Autor Kabir, Mohammad Faujul, Mohd Ali, Johari, Haji Hashim, Onn

“…) and hepatocellular carcinoma (HepG2) cell lines was characterized through microarray gene expression profiling…”
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Gene Expression Microarray Data Analysis for Toxicology Profiling Autor CUNNINGHAM, M. J., LIANG, S., FURMAN, S., SEILHAMER, J. J., SOMOGYI, R.

“…: When dealing with thousands of genes, all potentially interesting, it is desirable to rank the genes according to their degree of participation in a physiological process…”
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A trend pattern assessment approach to microarray gene expression profiling data analysis Autor Cao, Kajia, Zhu, Qiuming, Iqbal, Javeed, Chan, John W.C.

“…) from DNA Microarray gene expression profiling data sets. Fisher’s Discriminate Criterion (FDC) is used as a statistical measurement in the processes. It is found that the weed-out trend analysis (WOTA) approach is effective for qualitatively assessing the statistics-based measurements in the experimentations conducted…”
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Discovering gene expression patterns in time course microarray experiments by ANOVA–SCA Autor Nueda, María José, Conesa, Ana, Westerhuis, Johan A., Hoefsloot, Huub C. J., Smilde, Age K., Talón, Manuel, Ferrer, Alberto

“…Motivation: Designed microarray experiments are used to investigate the effects that controlled experimental factors have on gene expression and learn about the transcriptional responses associated with external variables…”
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Removing batch effects from purified plasma cell gene expression microarrays with modified ComBat Autor Stein, Caleb K, Qu, Pingping, Epstein, Joshua, Buros, Amy, Rosenthal, Adam, Crowley, John, Morgan, Gareth, Barlogie, Bart

“…Background Gene expression profiling (GEP) via microarray analysis is a widely used tool for assessing risk and other patient diagnostics in clinical settings…”
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Identification of oncogenic long noncoding RNA SNHG12 and DUXAP8 in human bladder cancer through a comprehensive profiling analysis Autor Jiang, Bin, Hailong, Su, Yuan, Jun, Zhao, Hu, Xia, Wenkai, Zha, Zhenlei, Bin, Wu, Liu, Zhili

“… relevance using The Cancer Genome Atlas (TCGA) data and three independent microarray profiling data from the Gene Expression Omnibus (GEO…”
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Biomarker discovery in non-small cell lung cancer: integrating gene expression profiling, meta-analysis, and tissue microarray validation Autor Botling, Johan, Edlund, Karolina, Lohr, Miriam, Hellwig, Birte, Holmberg, Lars, Lambe, Mats, Berglund, Anders, Ekman, Simon, Bergqvist, Michael, Pontén, Fredrik, König, André, Fernandes, Oswaldo, Karlsson, Mats, Helenius, Gisela, Karlsson, Christina, Rahnenführer, Jörg, Hengstler, Jan G, Micke, Patrick

“…Global gene expression profiling has been widely used in lung cancer research to identify clinically relevant molecular subtypes as well as to predict prognosis and therapy response…”
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DNA Microarray Profiling Highlights Nrf2-Mediated Chemoprevention Targeted by Wasabi-Derived Isothiocyanates in HepG2 Cells Autor Trio, Phoebe Zapanta, Kawahara, Atsuyoshi, Tanigawa, Shunsuke, Sakao, Kozue, Hou, De-Xing

“… We performed comparative gene expression profiling by treating HepG2 cells with ITCs, followed by DNA microarray analyses using HG-U133 plus…”
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Analyzing gene expression data from microarray and next-generation dna sequencing transcriptome profiling assays using GeneSifter analysis edition Autor Porter, Sandra, Olson, N Eric, Smith, Todd

“…Transcription profiling with microarrays has become a standard procedure for comparing the levels of gene expression between pairs of samples, or multiple samples following different experimental treatments…”
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Identification of candidate aberrantly methylated and differentially expressed genes in Esophageal squamous cell carcinoma Autor Han, Bao-Ai, Yang, Xiu-Ping, Hosseini, Davood K, Zhang, Po, Zhang, Ya, Yu, Jin-Tao, Chen, Shan, Zhang, Fan, Zhou, Tao, Sun, Hai-Ying

“… We downloaded data of gene expression microarrays (GSE20347, GSE38129) and gene methylation microarrays (GSE52826…”
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Gene Expression Profiling and Assessment of Vitamin D and Serotonin Pathway Variations in Patients With Irritable Bowel Syndrome Autor Dussik, Christopher M, Hockley, Maryam, Grozić, Aleksandra, Kaneko, Ichiro, Zhang, Lin, Sabir, Marya S, Park, Jin, Wang, Jie, Nickerson, Cheryl A, Yale, Steven H, Rall, Christopher J, Foxx-Orenstein, Amy E, Borror, Connie M, Sandrin, Todd R, Jurutka, Peter W

“… Gene transcripts from 24 tissue biopsy samples were hybridized to microarrays for gene expression profiling…”
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Comparison of RNA-Seq and Microarray in Transcriptome Profiling of Activated T Cells Autor Zhao, Shanrong, Fung-Leung, Wai-Ping, Bittner, Anton, Ngo, Karen, Liu, Xuejun

“…To demonstrate the benefits of RNA-Seq over microarray in transcriptome profiling, both RNA-Seq and microarray analyses were performed on RNA samples from a human T cell activation experiment…”
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Microarray is an efficient tool for circRNA profiling Autor Li, Shasha, Teng, Shuaishuai, Xu, Junquan, Su, Guannan, Zhang, Yu, Zhao, Jianqing, Zhang, Suwei, Wang, Haiyan, Qin, Wenyan, Lu, Zhi John, Guo, Yong, Zhu, Qianyong, Wang, Dong

“… In this study, we integrated 87 935 circRNAs sequences that cover most of circRNAs identified till now represented in circBase to design microarray probes targeting back-splice site of each circRNA to profile expression of those circRNAs…”
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Microarray Gene Expression Data Analysis Autor Liew, Alan Wee‐Chung, Gan, Xiangchao

“…This chapter contains sections titled: Introduction DNA Microarray Technology and Experiment Image Analysis and Expression Data Extraction Data Processing Missing Value Imputation Temporal Gene Expression Profile Analysis Cyclic Gene…”
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