Search Results - Computing Algorithms and Bioinformatics

Molecular Computing and Bioinformatics by Liang, Xin, Zhu, Wen, Lv, Zhibin, Zou, Quan

“…Molecular computing and bioinformatics are two important interdisciplinary sciences that study molecules and computers…”
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New classifications for quantum bioinformatics: Q-bioinformatics, QCt-bioinformatics, QCg-bioinformatics, and QCr-bioinformatics by Mokhtari, Majid, Khoshbakht, Samane, Ziyaei, Kobra, Akbari, Mohammad Esmaeil, Moravveji, Sayyed Sajjad

“…Abstract Bioinformatics has revolutionized biology and medicine by using computational methods to analyze and interpret biological data…”
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A fast adaptive algorithm for computing whole-genome homology maps by Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas

“… Results We introduce an approximate algorithm for computing local alignment boundaries between long DNA sequences…”
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BOA: A partitioned view of genome assembly by An, Xiaojing, Ghosh, Priyanka, Keppler, Patrick, Kurt, Sureyya Emre, Krishnamoorthy, Sriram, Sadayappan, Ponnuswamy, Rajam, Aravind Sukumaran, Çatalyürek, Ümit V., Kalyanaraman, Ananth

“…De novo genome assembly is a fundamental problem in computational molecular biology that aims to reconstruct an unknown genome sequence from a set of short DNA…”
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Quantum computing in bioinformatics: a systematic review mapping by Nałęcz-Charkiewicz, Katarzyna, Charkiewicz, Kamil, Nowak, Robert M

“… Bioinformatics is one such domain that is developing in terms of QC. This article offers a broad mapping review of methods and algorithms of QC in bioinformatics, marking the first of its kind…”
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Linear-time algorithms for computing maximum-density sequence segments with bioinformatics applications by Goldwasser, Michael H., Kao, Ming-Yang, Lu, Hsueh-I

“… ) -time algorithm, improving upon the O ( n log L ) -time algorithm by Lin, Jiang and Chao…”
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Next-generation bioinformatics: using many-core processor architecture to develop a web service for sequence alignment by Gálvez, Sergio, Díaz, David, Hernández, Pilar, Esteban, Francisco J., Caballero, Juan A., Dorado, Gabriel

“…Motivation: Bioinformatics algorithms and computing power are the main bottlenecks for analyzing huge amount of data generated by the current technologies, such as the ‘next-generation…”
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Comparison and improvement of algorithms for computing minimal cut sets by Jungreuthmayer, Christian, Nair, Govind, Klamt, Steffen, Zanghellini, Jürgen

“… Two different algorithmic schemes (adapted Berge algorithm and binary integer programming…”
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Fast algorithms for computing phylogenetic divergence time by Crosby, Ralph W., Williams, Tiffani L.

“… In this work, we present a new algorithm, AncestralAge, that significantly improves the performance of the divergence time process…”
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A practical O(n log2n) time algorithm for computing the triplet distance on binary trees by Sand, Andreas, Brodal, Gerth Stølting, Fagerberg, Rolf, Pedersen, Christian NS, Mailund, Thomas

“… ). The algorithm is related to an algorithm for computing the quartet distance between two unrooted binary trees in time O ( n log n…”
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An algorithm for computing the gene tree probability under the multispecies coalescent and its application in the inference of population tree by Wu, Yufeng

“… There are two existing algorithms for computing the exact gene tree probability. The first algorithm is due to Degnan and Salter, where they enumerate all the so-called coalescent histories for the given species tree and the gene tree topology…”
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Rfold: an exact algorithm for computing local base pairing probabilities by Kiryu, Hisanori, Kin, Taishin, Asai, Kiyoshi

“… Recently, there has been a growing need for computing these probabilities for long DNA sequences by constraining the maximal span of base pairs to a limited value…”
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An ontology for biological function based on molecular interactions by Karp, Peter D.

“… Functional bioinformatics is an emerging subfield of bioinformatics that is concerned with developing ontologies and algorithms for computing with biological function. Results…”
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A parallel computing algorithm for 16S rRNA probe design: Grids in bioinformatics and computational biology by DIANHUI ZHU, FOFANOV, Yuriy, WILLSON, Richard C, FOX, George E

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Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources by Hanussek, Maximilian, Bartusch, Felix, Krüger, Jens

“…The large amount of biological data available in the current times, makes it necessary to use tools and applications based on sophisticated and efficient algorithms, developed in the area of bioinformatic…”
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Randomized Algorithms in Bioinformatics: RANDOMIZEDCAMSORT by Can, Mehmet, Lutin, Hüseyin

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Fast algorithms for computing the tripartition-based distance between phylogenetic networks: Special issue on bioinformatics by NGUYEN BAO NGUYEN, THACH NGUYEN, C, SUNG, Wing-Kin

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Parallelizing and optimizing a bioinformatics pairwise sequence alignment algorithm for many-core architecture by Díaz, David, Esteban, Francisco José, Hernández, Pilar, Caballero, Juan Antonio, Dorado, Gabriel, Gálvez, Sergio

“… ► Many-core technologies can meet successfully challenging bioinformatics needs. Current computer engineering evolves at an accelerated pace, with hardware advancing towards new chip multiprocessors (CMP…”
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Unipro UGENE: a unified bioinformatics toolkit by Okonechnikov, Konstantin, Golosova, Olga, Fursov, Mikhail

“…Unipro UGENE is a multiplatform open-source software with the main goal of assisting molecular biologists without much expertise in bioinformatics to manage, analyze and visualize their data…”
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Multiple sequence alignment with affine gap by using multi-objective genetic algorithm by Kaya, Mehmet, Sarhan, Abdullah, Alhajj, Reda

“…Multiple sequence alignment is of central importance to bioinformatics and computational biology…”
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