Search Results - Algorithm Parallelization. Keywords CUDA

A Parallelization of Non-Serial Polyadic Dynamic Programming on GPU by Diwan, Tausif, Tembhurne, Jitendra

“…Parallelization of Non-Serial Polyadic Dynamic Programming (NPDP) on high-throughput manycore architectures, such as NVIDIA GPUs, suffers from load imbalance, i.e…”
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Parallelization of heterogeneous reactor calculations on a graphics processing unit by Malofeev, V. M., Pal’shin, V. A.

“…Parallelization is applied to the neutron calculations performed by the heterogeneous method on a graphics processing unit…”
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Parallel alpha-beta algorithm on the GPU by Strnad, D., Guid, N.

“…In the paper we present the parallel implementation of the alpha-beta algorithm running on the graphics processing unit (GPU…”
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rapidGSEA: Speeding up gene set enrichment analysis on multi-core CPUs and CUDA-enabled GPUs by Hundt, Christian, Hildebrandt, Andreas, Schmidt, Bertil

“…Background Gene Set Enrichment Analysis (GSEA) is a popular method to reveal significant dependencies between predefined sets of gene symbols and observed…”
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GPU based numerical simulation of core shooting process by Zhang, Yi-zhong, Lu, Gao-chun, Ni, Chang-jiang, Jing, Tao, Yang, Lin-long, Wu, Qin-fang

“… The parallel algorithm based on the Compute Unified Device Architecture（CUDA） platform can significantly decrease computing time by multi…”
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Optimizing the Bellman-Ford Algorithm Using GPU Parallelization by Cholla, Dr. Raman

“…ABSTRACT The Bellman-Ford algorithm's temporal complexity of O(VE) renders it ineffective for big and dense networks, which is a serious computational disadvantage…”
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Removing duplicate reads using graphics processing units by Manconi, Andrea, Moscatelli, Marco, Armano, Giuliano, Gnocchi, Matteo, Orro, Alessandro, Milanesi, Luciano

“…Background During library construction polymerase chain reaction is used to enrich the DNA before sequencing. Typically, this process generates duplicate read…”
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HECTOR: a parallel multistage homopolymer spectrum based error corrector for 454 sequencing data by Wirawan, Adrianto, Harris, Robert S, Liu, Yongchao, Schmidt, Bertil, Schröder, Jan

“… In this algorithm, for the first time we have investigated a novel homopolymer spectrum based approach to handle homopolymer insertions or deletions, which are the dominant sequencing errors in 454 pyrosequencing reads…”
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CUDASW++ 3.0: accelerating Smith-Waterman protein database search by coupling CPU and GPU SIMD instructions by Liu, Yongchao, Wirawan, Adrianto, Schmidt, Bertil

“… For the GPU computation, we have investigated for the first time a GPU SIMD parallelization, which employs CUDA PTX SIMD video instructions to gain more data parallelism beyond the SIMT execution model…”
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