Suchergebnisse - (state OR (statu OR statni)) python code analysis*

GSEApy: a comprehensive package for performing gene set enrichment analysis in Python von Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“… Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes …”
Volltext

PyLAT: Python LAMMPS Analysis Tools von Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT …”
Weitere Angaben

MechElastic: A Python library for analysis of mechanical and elastic properties of bulk and 2D materials von Singh, Sobhit, Lang, Logan, Dovale-Farelo, Viviana, Herath, Uthpala, Tavadze, Pedram, Coudert, François-Xavier, Romero, Aldo H.

“… The MechElastic Python package evaluates the mechanical and elastic properties of bulk and 2D materials using the elastic coefficient matrix (Cij …”
Volltext

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data von Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor

“… Abstract Summary scFates provides an extensive toolset for the analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a …”
Volltext

MEG and EEG data analysis with MNE-Python von Gramfort, Alexandre

“… As part of the MNE software suite, MNE-Python is an open-source software package that addresses this challenge by providing state-of-the-art algorithms implemented in Python that cover multiple …”
Volltext

Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics von Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“… Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics …”
Volltext

powerlaw: A Python Package for Analysis of Heavy-Tailed Distributions von Alstott, Jeff, Bullmore, Ed, Plenz, Dietmar

“… In order to greatly decrease the barriers to using good statistical methods for fitting power law distributions, we developed the powerlaw Python package …”
Volltext

Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code von Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“… Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of …”
Weitere Angaben

Coherent manipulation of the internal state of ultracold 87Rb133Cs molecules with multiple microwave fields von Blackmore, Jacob A, Gregory, Philip D, Bromley, Sarah L, Cornish, Simon L

“… We explore coherent multi-photon processes in 87Rb133Cs molecules using 3-level lambda and ladder configurations of rotational and hyperfine states, and discuss their relevance to future applications …”
Weitere Angaben

Pytim: A python package for the interfacial analysis of molecular simulations von Sega, Marcello, Hantal, György, Fábián, Balázs, Jedlovszky, Pál

“… Pytim is a versatile python framework for the analysis of interfacial properties in molecular simulations …”
Volltext

LiPydomics: A Python Package for Comprehensive Prediction of Lipid Collision Cross Sections and Retention Times and Analysis of Ion Mobility-Mass Spectrometry-Based Lipidomics Data von Ross, Dylan H, Cho, Jang Ho, Zhang, Rutan, Hines, Kelly M, Xu, Libin

“… Existing solutions for these data analysis challenges (i.e., multivariate statistics and lipid identification …”
Weitere Angaben

Nmrglue: an open source Python package for the analysis of multidimensional NMR data von Helmus, Jonathan J., Jaroniec, Christopher P.

“… When used in combination with other Python scientific libraries, nmrglue provides a highly flexible and robust environment for spectral processing, analysis and visualization and includes a number …”
Volltext

COBRApy: COnstraints-Based Reconstruction and Analysis for Python von Ebrahim, Ali, Lerman, Joshua A, Palsson, Bernhard O, Hyduke, Daniel R

“… Background COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes …”
Volltext

Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python von Kuehl, Malte, Wong, Milagros N, Wanner, Nicola, Bonn, Stefan, Puelles, Victor G

“… However, their output consists of transcript count estimates that are subject to multiple biases and cannot be readily used with existing differential gene expression analysis tools in Python …”
Volltext

VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres von Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“… We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN …”
Volltext

Gnocis: An integrated system for interactive and reproducible analysis and modelling of cis-regulatory elements in Python 3 von Bredesen-Aa, Bjørn André, Rehmsmeier, Marc

“… methods for the genome-wide prediction of candidate CREs. We here present Gnocis, a Python package that streamlines the analysis and the modelling of CRE sequences …”
Volltext

Kssdtree: an interactive Python package for phylogenetic analysis based on sketching technique von Yang, Hang, Lu, Xiaoxin, Chang, Jiaxing, Chang, Qing, Zheng, Wen, Chen, Zehua, Yi, Huiguang

“… These limitations collectively impede the overall convenience and efficiency of the analysis. In this study, we introduce Kssdtree, an interactive Python package designed to address these challenges …”
Volltext

SciPy 1.0: fundamental algorithms for scientific computing in Python von Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“… Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages …”
Volltext

OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry von Cardona, Gabriel, Pujol-Nadal, Ramon

“… We present here the open source python package OTSun, which applies the Fresnel equations in their most general form, without further simplifications, and is suitable for the simulation of both solar …”
Volltext

BatAnalysis: A Comprehensive Python Pipeline for Swift BAT Survey Analysis von Parsotan, Tyler, Laha, Sibasish, Palmer, David M., Lien, Amy, Cenko, S. Bradley, Krimm, Hans, Markwardt, Craig

“… The Swift Burst Alert Telescope (BAT) is a coded aperture gamma-ray instrument with a large field of view that primarily operates in survey mode when it is not …”
Volltext