Suchergebnisse - (jana OR jan) AND python source code*

Guide assignment in single-cell CRISPR screens using crispat von Braunger, Jana M, Velten, Britta

“… To address this, we here propose crispat (CRISPR guide assignment tool), a Python package to facilitate the choice of a suitable guide assignment strategy for single-cell CRISPR screens …”
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Beyond Warning Lists: How to Uncover Patterns in Python Static Code Warnings Using Association Rule Mining von Schappacher-Tilp, Gudrun, Kornberger, Jan, Kaehling, Nicoletta, Beichler, Kevin, Teiniker, Egon

“… By treating each source file as a transaction and warning codes as items, we identify recurring cooccurrence patterns, directional relationships, and warning "hubs" that consistently appear across multiple repositories …”
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PHOTONAI—A Python API for rapid machine learning model development von Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim

“… PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development …”
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Lingual-Fusion Adapter-Based Transfer Learning for Low-Resource Code Vulnerability Detection von Long, Xinyue, Guo, Shikai, Chai, Yu, Li, Hui, Jan, Sumaira Ameer, Ma, Qian, Ning, Qiao

“… points.For instance, in a scenario where a software system integrates legacy code in a low-resource programming language like PHP, detecting vulnerabilities becomes challenging due to data scarcity …”
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Innovative UAV LiDAR Generated Point-Cloud Processing Algorithm in Python for Unsupervised Detection and Analysis of Agricultural Field-Plots von Polák, Michal, Miřijovský, Jakub, Hernándiz, Alba E., Špíšek, Zdeněk, Koprna, Radoslav, Humplík, Jan F.

“… The estimation of plant growth is a challenging but key issue that may help us to understand crop vs. environment interactions. To perform precise and …”
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Marginalizing Sample Consensus von Barath, Daniel, Noskova, Jana, Matas, Jiri

“… A new method for robust estimation, MAGSAC++, is proposed. It introduces a new model quality (scoring) function that does not make inlier-outlier decisions, …”
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deepFPlearn +: enhancing toxicity prediction across the chemical universe using graph neural networks von Soulios, Kyriakos, Scheibe, Patrick, Bernt, Matthias, Hackermüller, Jörg, Schor, Jana

“… Abstract Summary Sophisticated approaches for the in silico prediction of toxicity are required to support the risk assessment of chemicals. The number of …”
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NCBI’s Virus Discovery Codeathon: Building “FIVE” —The Federated Index of Viral Experiments API Index von Martí-Carreras, Joan, Gener, Alejandro, Miller, Sierra, Brito, Anderson, Camacho, Christiam, Connor, Ryan, Deboutte, Ward, Glickman, Cody, Kristensen, David, Meyer, Wynn, Modha, Sejal, Norris, Alexis, Saha, Surya, Belford, Anna, Biederstedt, Evan, Brister, James, Buchmann, Jan, Cooley, Nicholas, Edwards, Robert, Javkar, Kiran, Muchow, Michael, Muralidharan, Harihara, Pepe-Ranney, Charles, Shah, Nidhi, Shakya, Migun, Tisza, Michael, Tully, Benjamin, Vanmechelen, Bert, Virta, Valerie, Weissman, JL, Zalunin, Vadim, Efremov, Alexandre, Busby, Ben

“… Unifying or displaying alternative annotations should be a priority both for communities with robust entry representation and for nascent communities with burgeoning data sources …”
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DéjàVu: a map of code duplicates on GitHub von Lopes, Cristina V., Maj, Petr, Martins, Pedro, Saini, Vaibhav, Yang, Di, Zitny, Jakub, Sajnani, Hitesh, Vitek, Jan

“… Previous studies have shown that there is a non-trivial amount of duplication in source code …”
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PyEMMA 2: A Software Package for Estimation, Validation, and Analysis of Markov Models von Scherer, Martin K, Trendelkamp-Schroer, Benjamin, Paul, Fabian, Pérez-Hernández, Guillermo, Hoffmann, Moritz, Plattner, Nuria, Wehmeyer, Christoph, Prinz, Jan-Hendrik, Noé, Frank

“… In this work we present the open-source Python package PyEMMA ( http://pyemma.org ) that provides accurate and efficient algorithms for kinetic model construction …”
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NeuroKit2: A Python toolbox for neurophysiological signal processing von Makowski, Dominique, Pham, Tam, Lau, Zen J., Brammer, Jan C., Lespinasse, François, Pham, Hung, Schölzel, Christopher, Chen, S. H. Annabel

“… NeuroKit2 is an open-source, community-driven, and user-centered Python package for neurophysiological signal processing …”
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CobraMod: a pathway-centric curation tool for constraint-based metabolic models von Camborda, Stefano, Weder, Jan-Niklas, Töpfer, Nadine

“… Thus, we developed CobraMod—a Python package for pathway-centric modification and extension of genome-scale metabolic networks …”
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Solar Energetic Particle Time Series Analysis with Python von Palmroos, Christian, Gieseler, Jan, Dresing, Nina, Morosan, Diana E, Asvestari, Eleanna, Yli-Laurila, Aleksi, Price, Daniel J, Valkila, Saku, Vainio, Rami

“… and processing tools are needed. This manuscript introduces a series of Python functions that will enable the scientific community to download, load, and visualize …”
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GimmeMotifs: a de novo motif prediction pipeline for ChIP-sequencing experiments von van Heeringen, Simon J., Veenstra, Gert Jan C.

“… Accurate prediction of transcription factor binding motifs that are enriched in a collection of sequences remains a computational challenge. Here we report on …”
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Methodology for Detecting Similarity of Program Code Based on Combining Algorithms von Novotochinov, Maksim E., Solomatin, Dmitry I., Chernenkii, Andrei V.

“… In this paper, the main existing strategies used in plagiarism of program code were investigated, as well as the most popular approaches used to identify copied texts were analyzed …”
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Nirjas: An open source framework for extracting metadata from the source code von Bhardwaj, Ayush, Sahil, Pratap, Kaushlendra, Mishra, Gaurav

“… Metadata/Comments are the critical element of any software development process. In this paper, we went on to explain how the metadata/comments in the source code can play an essential role in comprehending the software …”
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Flow-Py v1.0: a customizable, open-source simulation tool to estimate runout and intensity of gravitational mass flows von D'Amboise, Christopher J L, Neuhauser, Michael, Teich, Michaela, Huber, Andreas, Kofler, Andreas, Perzl, Frank, Fromm, Reinhard, Kleemayr, Karl, Jan-Thomas, Fischer

“… Models and simulation tools for gravitational mass flows (GMFs) such as snow avalanches, rockfall, landslides, and debris flows are important for research, …”
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Binamix -- A Python Library for Generating Binaural Audio Datasets von Barry, Dan, Davoud Shariat Panah, Ragano, Alessandro, Skoglund, Jan, Hines, Andrew

“… in testing and validation. Binamix is an open-source Python library designed to facilitate programmatic binaural mixing using the extensive SADIE II Database, which provides Head Related Impulse Response (HRIR …”
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Binaspect -- A Python Library for Binaural Audio Analysis, Visualization & Feature Generation von Barry, Dan, Davoud Shariat Panah, Ragano, Alessandro, Skoglund, Jan, Hines, Andrew

“… We present Binaspect, an open-source Python library for binaural audio analysis, visualization, and feature generation …”
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Parameterization of mechanistic models from qualitative data using an efficient optimal scaling approach von Schmiester, Leonard, Weindl, Daniel, Hasenauer, Jan

“… Quantitative dynamical models facilitate the understanding of biological processes and the prediction of their dynamics. These models usually comprise unknown …”
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