Search Results - (issues OR issue) array analysis - methods

Scientometric analysis and mapping of documentary array on the issue “Oil and petroleum products in soil and groundwater” by Busygina, Tatyana, Rykova, Valentina

“…The paper represents a scientometric analysis of a documentary array selected form Web of Science database on the issue…”
Get full text

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets by Ramasamy, Adaikalavan, Mondry, Adrian, Holmes, Chris C, Altman, Douglas G

“… [...]in this paper, we disentangle this complex topic and identify seven distinct key issues specific to meta-analysis of microarray datasets, each comprising several steps…”
Get full text

Design issues for cDNA microarray experiments by Yang, Yee Hwa, Speed, Terry

“…Key Points Microarray experiments are widely used to quantify and compare gene expression on a large scale, it is therefore important that they are designed with care as aspects of their design will…”
Get full text

ArrayExpress update – from bulk to single-cell expression data by Athar, Awais, Füllgrabe, Anja, George, Nancy, Iqbal, Haider, Huerta, Laura, Ali, Ahmed, Snow, Catherine, Fonseca, Nuno A, Petryszak, Robert, Papatheodorou, Irene, Sarkans, Ugis, Brazma, Alvis

“… The number of experiments based on sequencing technologies, in particular RNA-seq experiments, has been increasing over the last few years and submissions of sequencing data have overtaken microarray…”
Get full text

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application by Li, Cheng, Hung Wong, Wing

“…A model-based analysis of oligonucleotide expression arrays we developed previously uses a probe-sensitivity index to capture the response characteristic of a specific probe pair and calculates model…”
Get full text

Genetic counselling and ethical issues with chromosome microarray analysis in prenatal testing by McGillivray, George, Rosenfeld, Jill A, McKinlay Gardner, R. J., Gillam, Lynn H.

“…Molecular karyotyping using chromosome microarray analysis (CMA) detects more pathogenic chromosomal anomalies than classical karyotyping, making CMA likely to become a first tier test for prenatal diagnosis…”
Get full text

Novel and neglected issues of acetone–butanol–ethanol (ABE) fermentation by clostridia: Clostridium metabolic diversity, tools for process mapping and continuous fermentation systems by Patakova, Petra, Linhova, Michaela, Rychtera, Mojmir, Paulova, Leona, Melzoch, Karel

“… Furthermore, process-mapping tools based on different principles, including flow cytometry, DNA microarray analysis, mass spectrometry, Raman microscopy, FT-IR spectroscopy and anisotropy…”
Get full text

Comprehensive transcriptome analysis of phytohormone biosynthesis and signaling genes in microspore/pollen and tapetum of rice by Hirano, Ko, Aya, Koichiro, Hobo, Tokunori, Sakakibara, Hitoshi, Kojima, Mikiko, Shim, Rosalyn Angeles, Hasegawa, Yasuko, Ueguchi-Tanaka, Miyako, Matsuoka, Makoto

“…) using a 44K microarray combined with a laser microdissection technique (LM-array analysis). IAA and GA(4) accumulated in a much higher amount in the mature anther compared with the other tissues, while CKs and ABA did…”
Get more information

Microtremor array method using spatial autocorrelation analysis of Rayleigh-wave data by Hayashi, Koichi, Asten, Michael W., Stephenson, William J., Cornou, Cécile, Hobiger, Manuel, Pilz, Marco, Yamanaka, Hiroaki

“…Microtremor array measurements, and passive surface wave methods in general, have been increasingly used to non-invasively estimate shear-wave velocity structures for various purposes…”
Get full text

An illustrated comparison of processing methods for MR phase imaging and QSM: combining array coil signals and phase unwrapping by Robinson, Simon Daniel, Bredies, Kristian, Khabipova, Diana, Dymerska, Barbara, Marques, José P., Schweser, Ferdinand

“…Phase imaging benefits from strong susceptibility effects at very high field and the high signal‐to‐noise ratio (SNR) afforded by multi‐channel coils…”
Get full text

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects by Tseng, G. C.

“…We consider the problem of comparing the gene expression levels of cells grown under two different conditions using cDNA microarray data…”
Get full text

Separated transcriptomes of male gametophyte and tapetum in rice: validity of a laser microdissection (LM) microarray by Suwabe, Keita, Suzuki, Go, Takahashi, Hirokazu, Shiono, Katsuhiro, Endo, Makoto, Yano, Kentaro, Fujita, Masahiro, Masuko, Hiromi, Saito, Hiroshi, Fujioka, Tomoaki, Kaneko, Fumi, Kazama, Tomohiko, Mizuta, Yoko, Kawagishi-Kobayashi, Makiko, Tsutsumi, Nobuhiro, Kurata, Nori, Nakazono, Mikio, Watanabe, Masao

“… In this study, a microarray technique combined with laser microdissection (44K LM-microarray) was developed and used to characterize separately the transcriptomes of the microspore/pollen and tapetum in rice…”
Get more information

Integration of microarray technology into prenatal diagnosis: counselling issues generated during the NICHD clinical trial by Wapner, Ronald J., Driscoll, Deborah A., Simpson, Joe Leigh

“…Cytogenetic microarray analysis (CMA) in prenatal testing detects chromosome abnormalities and new genetic syndromes that would be missed by conventional…”
Get full text

HPLC in Natural Product Analysis: The Detection Issue by Wolfender, Jean-Luc

“… The method is widespread and has been adapted to the analysis of a broad range of NPs generally without the need for complex sample preparation…”
Get full text

Identification of reference genes for RT-qPCR expression analysis in Arabidopsis and tomato seeds by Dekkers, Bas J W, Willems, Leo, Bassel, George W, van Bolderen-Veldkamp, R P Marieke, Ligterink, Wilco, Hilhorst, Henk W M, Bentsink, Leónie

“… Reverse transcription-quantitative real-time PCR (RT-qPCR) is the preferred method for targeted gene expression measurements because of its sensitivity and reproducibility…”
Get more information

A novel bio-inspired hybrid multi-filter wrapper gene selection method with ensemble classifier for microarray data by Nouri-Moghaddam, Babak, Ghazanfari, Mehdi, Fathian, Mohammad

“…Microarray technology is known as one of the most important tools for collecting DNA expression data…”
Get full text

Drinking from the Fire Hose — Statistical Issues in Genomewide Association Studies by Hunter, David J, Kraft, Peter

“… The past 3 months have seen the publication of a series of studies examining the inherited genetic underpinnings of common diseases such as prostate cancer, breast cancer, diabetes, and in this issue…”
Get full text

Microarray patches likely to reduce the operational costs of immunization: A Monte Carlo simulation study by Hagedorn, Brittany, Frey, Kurt, Scarna, Tiziana, El Sheikh, Fayad

“…Development of microneedle array patches (MAPs) for potential use in immunization is ongoing, but the cost of manufacturing is expected to be higher than that of existing needle-and-syringe vial systems…”
Get full text

Exon array data analysis using Affymetrix power tools and R statistical software by Lockstone, Helen E.

“… a decade. Methods to process and analyse the vast quantity of expression data generated by a typical microarray experiment are similarly well-established…”
Get full text

Design of high-density antibody microarrays for disease proteomics: Key technological issues by Borrebaeck, Carl A.K., Wingren, Christer

“… In this mini-review we discuss key technological issues that must be addressed in a cross-disciplinary manner before true global proteome analysis can be performed using…”
Get full text