Search Results - (dynamic OR dynamika) code analysis of python process*

SciPy 1.0: fundamental algorithms for scientific computing in Python by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“… Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages…”
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Python open-source signal processing and modeling/simulation for scientific research in structural dynamics—A review by Slavič, Janko, Zaletelj, Klemen, Gorjup, Domen, Pasca, Dag Pasquale, Aloisio, Angelo, Kvåle, Knut Andreas, Frøseth, Gunnstein Thomas, Weijtjens, Wout, Mujtaba, Ahmed, Česnik, Martin, Zorman, Aleš, Tsialiamanis, George, Tomac, Ivan, Ritto, Thiago G., Ocepek, Domen, Rohe, Dan, Silva, Olavo M., Masmeijer, Thijs C.P., Čufar, Krištof, Bregar, Tomaž, Kodrič, Miha, El Mahmoudi, Ahmed, Pogačar, Miha, Trainotti, Francesco, Göldeli, Mert, Čepon, Gregor, Timbó, Raphael, Cavallini, Aldemir A., Costa, Vinicius T., Santos, Jéssica G.F., Hughes, Aidan J., Vargas, Jacson G., Fernandes, André, Rixen, Daniel J., Worden, Keith, Boltežar, Miha

“… Avoiding duplication of effort leads to faster progress and greater societal benefit. The Python programming language provides readable code and is highly collaborative, leading to a large user community…”
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GPAW: An open Python package for electronic structure calculations by Mortensen, Jens Jørgen, Larsen, Ask Hjorth, Kuisma, Mikael, Ivanov, Aleksei V, Taghizadeh, Alireza, Peterson, Andrew, Haldar, Anubhab, Dohn, Asmus Ougaard, Schäfer, Christian, Jónsson, Elvar Örn, Hermes, Eric D, Nilsson, Fredrik Andreas, Kastlunger, Georg, Levi, Gianluca, Jónsson, Hannes, Häkkinen, Hannu, Fojt, Jakub, Kangsabanik, Jiban, Sødequist, Joachim, Lehtomäki, Jouko, Heske, Julian, Enkovaara, Jussi, Winther, Kirsten Trøstrup, Dulak, Marcin, Melander, Marko M, Ovesen, Martin, Louhivuori, Martti, Walter, Michael, Gjerding, Morten, Lopez-Acevedo, Olga, Erhart, Paul, Warmbier, Robert, Würdemann, Rolf, Kaappa, Sami, Latini, Simone, Boland, Tara Maria, Bligaard, Thomas, Skovhus, Thorbjørn, Susi, Toma, Maxson, Tristan, Rossi, Tuomas, Chen, Xi, Schmerwitz, Yorick Leonard A, Schiøtz, Jakob, Olsen, Thomas, Jacobsen, Karsten Wedel, Thygesen, Kristian Sommer

“…We review the GPAW open-source Python package for electronic structure calculations…”
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SIMA: Python software for analysis of dynamic fluorescence imaging data by Kaifosh, Patrick, Zaremba, Jeffrey D., Danielson, Nathan B., Losonczy, Attila

“… However, analysis of dynamic fluorescence imaging data remains burdensome, in part due to the shortage of available software tools…”
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BELLO: A post-processing tool for the local-order analysis of disordered systems by Dianat, Behnood, Tavanti, Francesco, Padovani, Andrea, Larcher, Luca, Calzolari, Arrigo

“… Here, we present the BELLO open source code, a post-processing script-tool created for the automatic analysis and extraction of structural characteristics of disordered and amorphous systems…”
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Exudyn – a C++-based Python package for flexible multibody systems by Gerstmayr, Johannes

“…The present contribution introduces the design, methods, functionalities, and capabilities of the open-source multibody dynamics code Exudyn, which has been developed since 2019…”
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Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals by Combrisson, Etienne, Nest, Timothy, Brovelli, Andrea, Ince, Robin A. A., Soto, Juan L. P., Guillot, Aymeric, Jerbi, Karim

“… In particular, there is accumulating evidence that phase-amplitude coupling (PAC), a specific form of cross-frequency interaction, plays a key role in numerous cognitive processes…”
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Bayesian modelling of time series data (BayModTS)—a FAIR workflow to process sparse and highly variable data by Höpfl, Sebastian, Albadry, Mohamed, Dahmen, Uta, Herrmann, Karl-Heinz, Kindler, Eva Marie, König, Matthias, Reichenbach, Jürgen Rainer, Tautenhahn, Hans-Michael, Wei, Weiwei, Zhao, Wan-Ting, Radde, Nicole Erika

“…) workflow for processing and analysing sparse and highly variable time series data. BayModTS consistently transfers uncertainties from data to model predictions, including process knowledge via parameterized models…”
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Performance of glass epoxy composites under combined effect of in‐plane fiber waviness with circular cutout through tensile test, and image processing technique by Muddebihal, Aravind, Gouda, P. S. Shivakumar, Uppin, Vinayak S., Edacherian, Abhilash, Patil, Santosh, Joshi, Prahlad, M A, Somashekara

“… Utilizing a pioneering technique that employs a semi‐circular bar to induce controlled fiber waviness, coupled with image processing using OpenCV library in Python coding for precise measurement and analysis…”
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Discovering Stochastic Dynamical Equations from Ecological Time Series Data by Nabeel, Arshed, Karichannavar, Ashwin, Palathingal, Shuaib, Jhawar, Jitesh, Brückner, David B, Raj M, Danny, Guttal, Vishwesha

“…AbstractTheoretical studies have shown that stochasticity can affect the dynamics of ecosystems in counterintuitive ways…”
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Dynamic Generation of Python Bindings for HPC Kernels by Zhu, Steven, AlAwar, Nader, Erez, Mattan, Gligoric, Milos

“… A recent trend among scientists-prototyping applications in dynamic languages such as Python-created a gap between the applications and existing HPKs…”
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MetaCerberus: distributed highly parallelized HMM-based processing for robust functional annotation across the tree of life by Figueroa III, Jose L, Dhungel, Eliza, Bellanger, Madeline, Brouwer, Cory R, White III, Richard Allen

“…Motivation MetaCerberus is a massively parallel, fast, low memory, scalable annotation tool for inference gene function across genomes to metacommunities…”
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STracking: a free and open-source Python library for particle tracking and analysis by Prigent, Sylvain, Valades-Cruz, Cesar Augusto, Leconte, Ludovic, Salamero, Jean, Kervrann, Charles

“…Abstract Summary Analysis of intra- and extracellular dynamic like vesicles transport involves particle tracking algorithms…”
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A Python/Fortran Implementation of the Lattice‐Boltzmann Kernel on Multiple GPU Using the OpenACC Framework by Junqueira‐Junior, Carlos, Medina, Erwan Zamora, Taibi, Noureddine, Marié, Simon

“… challenges due to the complexity of porting legacy codes to accelerator platforms. Directive‐based programming models such as OpenACC offer a minimally intrusive pathway…”
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ProLIF: a library to encode molecular interactions as fingerprints by Bouysset, Cédric, Fiorucci, Sébastien

“… Here, we present ProLIF, a Python library designed to generate interaction fingerprints for molecular complexes extracted from molecular dynamics trajectories, experimental structures, and docking simulations…”
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SuperflexPy 1.3.0: an open-source Python framework for building, testing, and improving conceptual hydrological models by Dal Molin, Marco, Kavetski, Dmitri, Fenicia, Fabrizio

“…Catchment-scale hydrological models are widely used to represent and improve our understanding of hydrological processes and to support operational water resource management…”
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PyCHAM (v2.1.1): a Python box model for simulating aerosol chambers by O'Meara, Simon Patrick, Xu, Shuxuan, Topping, David, Alfarra, M. Rami, Capes, Gerard, Lowe, Douglas, Shao, Yunqi, McFiggans, Gordon

“…In this paper the CHemistry with Aerosol Microphysics in Python (PyCHAM) box model software for aerosol chambers is described and assessed against benchmark simulations for accuracy…”
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Temporal and spatial pattern analysis and forecasting of methane: Satellite image processing by Elshukri, Fatima, Abusirriya, Noor Hussam, Braganza, Nathan Joseph, Amhamed, Abdulkarem, Alrebei, Odi Fawwaz

“…), this research presents a detailed examination of methane concentrations. The methodology includes generating daily, monthly, and yearly average images, alongside Sobel gradient images to enhance the analysis of daily and monthly variations…”
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BioNet: A Python interface to NEURON for modeling large-scale networks by Gratiy, Sergey L., Billeh, Yazan N., Dai, Kael, Mitelut, Catalin, Feng, David, Gouwens, Nathan W., Cain, Nicholas, Koch, Christof, Anastassiou, Costas A., Arkhipov, Anton

“… We developed a high-level application programming interface (API) in Python that facilitates building large-scale biophysically detailed networks and simulating them with NEURON on parallel computer architecture…”
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DARTS: an open-source Python pipeline for Ca2+ microdomain analysis in live cell imaging data by Woelk, Lena-Marie, Kovacevic, Dejan, Husseini, Hümeyra, Förster, Fritz, Gerlach, Fynn, Möckl, Franziska, Altfeld, Marcus, Guse, Andreas H., Diercks, Björn-Philipp, Werner, René

“…Ca 2+ microdomains play a key role in intracellular signaling processes. For instance, they mediate the activation of T cells and, thus, the initial adaptive immune system…”
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