Výsledky vyhľadávania - (dynamic OR dynamika) code analysis of python (programs OR (progress OR process))

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics Autor Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.

“… MASSpy adds dynamic modeling tools to the COnstraint-Based Reconstruction and Analysis Python (COBRApy…”
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Introduction to Python Dynamic Diffraction Toolkit ( PyDDT ): structural refinement of single crystals via X-ray phase measurements Autor Penacchio, Rafaela F. S., Estradiote, Maurício B., Remédios, Cláudio M. R., Calligaris, Guilherme A., Torikachvili, Milton S., Kycia, Stefan W., Morelhão, Sérgio L.

“…PyDDT is a free Python package of computer codes for exploiting X-ray dynamic multiple diffraction in single crystals…”
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SciPy 1.0: fundamental algorithms for scientific computing in Python Autor Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“… Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages…”
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Generative Type Inference for Python Autor Peng, Yun, Wang, Chaozheng, Wang, Wenxuan, Gao, Cuiyun, Lyu, Michael R.

“… However, its dynamic type system can lead to potential type errors, leading researchers to explore automatic type inference approaches for Python programs…”
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i-PI: A Python interface for ab initio path integral molecular dynamics simulations Autor Ceriotti, Michele, More, Joshua, Manolopoulos, David E.

“… Here we describe i-PI, an interface written in Python that has been designed to minimise the effort required to bring state-of-the-art path integral techniques to an electronic structure program…”
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Efficient Space–Time Reduced Order Model for Linear Dynamical Systems in Python Using Less than 120 Lines of Code Autor Kim, Youngkyu, Wang, Karen, Choi, Youngsoo

“…A classical reduced order model (ROM) for dynamical problems typically involves only the spatial reduction of a given problem…”
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SIMA: Python software for analysis of dynamic fluorescence imaging data Autor Kaifosh, Patrick, Zaremba, Jeffrey D., Danielson, Nathan B., Losonczy, Attila

“… However, analysis of dynamic fluorescence imaging data remains burdensome, in part due to the shortage of available software tools…”
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods Autor Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli

“…Background Variability in datasets is not only the product of biological processes…”
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Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors Autor Peng, Yun, Gao, Shuzheng, Gao, Cuiyun, Huo, Yintong, Lyu, Michael R.

“… Although the dynamic type system of Python facilitates the developers in writing Python programs, it also brings type errors at runtime which are prevalent yet not easy to fix…”
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Dynamic Generation of Python Bindings for HPC Kernels Autor Zhu, Steven, AlAwar, Nader, Erez, Mattan, Gligoric, Milos

“… A recent trend among scientists-prototyping applications in dynamic languages such as Python-created a gap between the applications and existing HPKs…”
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Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals Autor Combrisson, Etienne, Nest, Timothy, Brovelli, Andrea, Ince, Robin A. A., Soto, Juan L. P., Guillot, Aymeric, Jerbi, Karim

“… In particular, there is accumulating evidence that phase-amplitude coupling (PAC), a specific form of cross-frequency interaction, plays a key role in numerous cognitive processes…”
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DefAP: A Python code for the analysis of point defects in crystalline solids Autor Neilson, William D., Murphy, Samuel T.

“… into a material’s defect chemistry, it is essential to link the energies calculated to thermodynamic variables that fully describe its operating conditions…”
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ACPYPE - AnteChamber PYthon Parser interfacE Autor Sousa da Silva, Alan W, Vranken, Wim F

“… topologies and parameters for a variety of molecular dynamics programmes like GROMACS, CHARMM and CNS…”
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TESTING THE DYNAMIC EXECUTION OF PYTHON PROGRAM CODE DURING THE CERTIFICATION TESTING (DEVELOPMENT) STAGE IN THE CERTIFICATION SYSTEM OF THE MINISTRY OF DEFENSE OF RUSSIA Autor V.V. Samarov

“… When checking applications developed in the Python language for compliance of their code with the requirements of the governing document "Protection against unauthorized access to information. Part 1…”
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mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data Autor Pérez-Hernández, Guillermo, Hildebrand, Peter W.

“…) for easy, one-shot analysis and representation of molecular dynamics (MD) simulation data. Building upon the widely used concept of residue-residue contact-frequencies…”
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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS Autor Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton

“…Background The molecular dynamics is an approach to obtain kinetic and thermodynamic characteristics of biomolecular structures…”
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pyIAST: Ideal adsorbed solution theory (IAST) Python package Autor Simon, Cory M., Smit, Berend, Haranczyk, Maciej

“…Ideal adsorbed solution theory (IAST) is a widely-used thermodynamic framework to readily predict mixed-gas adsorption isotherms from a set of pure-component adsorption isotherms…”
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CRYSTALpytools: A Python infrastructure for the Crystal code Autor Camino, Bruno, Zhou, Huanyu, Ascrizzi, Eleonora, Boccuni, Alberto, Bodo, Filippo, Cossard, Alessandro, Mitoli, Davide, Ferrari, Anna Maria, Erba, Alessandro, Harrison, Nicholas M.

“…CRYSTALpytools is an open source Python project available on GitHub that implements a user-friendly interface to the Crystal code for quantum-mechanical condensed matter simulations…”
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GraphPyRec: A novel graph-based approach for fine-grained Python code recommendation Autor Zong, Xing, Zheng, Shang, Zou, Haitao, Yu, Hualong, Gao, Shang

“… Significant progress has been made in code recommendation for static languages in recent years, but it remains challenging for dynamic languages like Python as accurately determining data flows…”
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SuperflexPy 1.3.0: an open-source Python framework for building, testing, and improving conceptual hydrological models Autor Dal Molin, Marco, Kavetski, Dmitri, Fenicia, Fabrizio

“…Catchment-scale hydrological models are widely used to represent and improve our understanding of hydrological processes and to support operational water resource management…”
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