Search Results - (dynamic OR (dynamik OR dynamika)) code analysis of python (programs OR process)

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics by Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.

“… MASSpy adds dynamic modeling tools to the COnstraint-Based Reconstruction and Analysis Python (COBRApy…”
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Introduction to Python Dynamic Diffraction Toolkit ( PyDDT ): structural refinement of single crystals via X-ray phase measurements by Penacchio, Rafaela F. S., Estradiote, Maurício B., Remédios, Cláudio M. R., Calligaris, Guilherme A., Torikachvili, Milton S., Kycia, Stefan W., Morelhão, Sérgio L.

“…PyDDT is a free Python package of computer codes for exploiting X-ray dynamic multiple diffraction in single crystals…”
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SciPy 1.0: fundamental algorithms for scientific computing in Python by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“… Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages…”
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Generative Type Inference for Python by Peng, Yun, Wang, Chaozheng, Wang, Wenxuan, Gao, Cuiyun, Lyu, Michael R.

“… However, its dynamic type system can lead to potential type errors, leading researchers to explore automatic type inference approaches for Python programs…”
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i-PI: A Python interface for ab initio path integral molecular dynamics simulations by Ceriotti, Michele, More, Joshua, Manolopoulos, David E.

“… Here we describe i-PI, an interface written in Python that has been designed to minimise the effort required to bring state-of-the-art path integral techniques to an electronic structure program…”
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SIMA: Python software for analysis of dynamic fluorescence imaging data by Kaifosh, Patrick, Zaremba, Jeffrey D., Danielson, Nathan B., Losonczy, Attila

“… However, analysis of dynamic fluorescence imaging data remains burdensome, in part due to the shortage of available software tools…”
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Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors by Peng, Yun, Gao, Shuzheng, Gao, Cuiyun, Huo, Yintong, Lyu, Michael R.

“… Although the dynamic type system of Python facilitates the developers in writing Python programs, it also brings type errors at runtime which are prevalent yet not easy to fix…”
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pyComBat, a Python tool for batch effects correction in high-throughput molecular data using empirical Bayes methods by Behdenna, Abdelkader, Colange, Maximilien, Haziza, Julien, Gema, Aryo, Appé, Guillaume, Azencott, Chloé-Agathe, Nordor, Akpéli

“…Background Variability in datasets is not only the product of biological processes…”
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Efficient Space–Time Reduced Order Model for Linear Dynamical Systems in Python Using Less than 120 Lines of Code by Kim, Youngkyu, Wang, Karen, Choi, Youngsoo

“…A classical reduced order model (ROM) for dynamical problems typically involves only the spatial reduction of a given problem…”
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Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals by Combrisson, Etienne, Nest, Timothy, Brovelli, Andrea, Ince, Robin A. A., Soto, Juan L. P., Guillot, Aymeric, Jerbi, Karim

“… In particular, there is accumulating evidence that phase-amplitude coupling (PAC), a specific form of cross-frequency interaction, plays a key role in numerous cognitive processes…”
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DefAP: A Python code for the analysis of point defects in crystalline solids by Neilson, William D., Murphy, Samuel T.

“… into a material’s defect chemistry, it is essential to link the energies calculated to thermodynamic variables that fully describe its operating conditions…”
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ACPYPE - AnteChamber PYthon Parser interfacE by Sousa da Silva, Alan W, Vranken, Wim F

“… topologies and parameters for a variety of molecular dynamics programmes like GROMACS, CHARMM and CNS…”
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TESTING THE DYNAMIC EXECUTION OF PYTHON PROGRAM CODE DURING THE CERTIFICATION TESTING (DEVELOPMENT) STAGE IN THE CERTIFICATION SYSTEM OF THE MINISTRY OF DEFENSE OF RUSSIA by V.V. Samarov

“… When checking applications developed in the Python language for compliance of their code with the requirements of the governing document "Protection against unauthorized access to information. Part 1…”
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A Python-based stochastic library for assessing geothermal power potential using the volumetric method in a liquid-dominated reservoir by Pocasangre, Carlos, Fujimitsu, Yasuhiro

“…•A Python-based stochastic library is presented for assessing geothermal potential…”
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mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data by Pérez-Hernández, Guillermo, Hildebrand, Peter W.

“…) for easy, one-shot analysis and representation of molecular dynamics (MD) simulation data. Building upon the widely used concept of residue-residue contact-frequencies…”
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pyIAST: Ideal adsorbed solution theory (IAST) Python package by Simon, Cory M., Smit, Berend, Haranczyk, Maciej

“…Ideal adsorbed solution theory (IAST) is a widely-used thermodynamic framework to readily predict mixed-gas adsorption isotherms from a set of pure-component adsorption isotherms…”
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Visual dynamics: a WEB application for molecular dynamics simulation using GROMACS by Vieira, Ivo Henrique Provensi, Botelho, Eduardo Buganemi, de Souza Gomes, Thales Junior, Kist, Roger, Caceres, Rafael Andrade, Zanchi, Fernando Berton

“…Background The molecular dynamics is an approach to obtain kinetic and thermodynamic characteristics of biomolecular structures…”
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Dynamic Generation of Python Bindings for HPC Kernels by Zhu, Steven, AlAwar, Nader, Erez, Mattan, Gligoric, Milos

“… A recent trend among scientists-prototyping applications in dynamic languages such as Python-created a gap between the applications and existing HPKs…”
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SuperflexPy 1.3.0: an open-source Python framework for building, testing, and improving conceptual hydrological models by Dal Molin, Marco, Kavetski, Dmitri, Fenicia, Fabrizio

“…Catchment-scale hydrological models are widely used to represent and improve our understanding of hydrological processes and to support operational water resource management…”
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CRYSTALpytools: A Python infrastructure for the Crystal code by Camino, Bruno, Zhou, Huanyu, Ascrizzi, Eleonora, Boccuni, Alberto, Bodo, Filippo, Cossard, Alessandro, Mitoli, Davide, Ferrari, Anna Maria, Erba, Alessandro, Harrison, Nicholas M.

“…CRYSTALpytools is an open source Python project available on GitHub that implements a user-friendly interface to the Crystal code for quantum-mechanical condensed matter simulations…”
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