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SBML2HYB: a Python interface for SBML compatible hybrid modeling by Pinto, José, Costa, Rafael S, Alexandre, Leonardo, Ramos, João, Oliveira, Rui

“… The tool supports a user-friendly export interface with an internal format validator. Two case studies illustrate the use of the sbml2hyb tool…”
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imzML Writer: An Easy-to-Use Python Pipeline for Conversion of Continuously Acquired Raw Mass Spectrometry Imaging Data to imzML Format by Monaghan, Joseph, Nguyen, Kiera, Woytowich, Nicholas, Keyowski, Alora, Duncan, Kyle D

“…). Here, we present imzML Writer, an easy-to-use Python application with a graphical…”
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Sensortoolkit—A Python Library for Standardizing the Ingestion, Analysis, and Reporting of Air Sensor Data for Performance Evaluation by Kumar, Menaka, Frederick, Samuel G., Barkjohn, Karoline K., Clements, Andrea L.

“… The library compares the collocated air sensor against reference monitor data and includes procedures to reformat both datasets into a standardized format using an interactive setup module…”
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pyM2aia: Python interface for mass spectrometry imaging with focus on deep learning by Cordes, Jonas, Enzlein, Thomas, Hopf, Carsten, Wolf, Ivo

“… pyM2aia provides interfaces to its parent application M2aia, which offers interactive capabilities for exploring and annotating MSI data in imzML format…”
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A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank by Smelter, Andrey, Astra, Morgan, Moseley, Hunter N. B.

“…s. It is primarily maintained and accessed in a flat file ASCII format known as NMR-STAR. While the format is human readable, the size of most BMRB entries makes computer…”
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Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python by Kuehl, Malte, Wong, Milagros N, Wanner, Nicola, Bonn, Stefan, Puelles, Victor G

“… Here we present pytximport, a Python implementation of the tximport R package that supports a variety of input formats, different modes of bias correction, inferential replicates, gene-level…”
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Bite-Size Python: An Introduction to Python Programming by Speight, April

“…Introduce children to the popular Python programming language through relatable examples and fun projects…”
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A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository by Smelter, Andrey, Moseley, Hunter N. B.

“… The data and metadata for each study is deposited, stored, and accessed via files in the domain-specific ‘mwTab’ flat file format…”
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pvlib iotools—Open-source Python functions for seamless access to solar irradiance data by Jensen, Adam R., Anderson, Kevin S., Holmgren, William F., Mikofski, Mark A., Hansen, Clifford W., Boeman, Leland J., Loonen, Roel

“… However, lack of standardization in data formats and access interfaces across providers constitutes a major barrier to entry for new users. pvlib…”
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QuTiP 2: A Python framework for the dynamics of open quantum systems by Johansson, J.R., Nation, P.D., Nori, Franco

“…We present version 2 of QuTiP, the Quantum Toolbox in Python. Compared to the preceding version [J.R. Johansson, P.D. Nation, F. Nori, Comput. Phys. Commun. 183 (2012) 1760…”
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Python for MATLAB Development - Extend MATLAB with 300,000+ Modules from the Python Package Index by Danial, Albert

“… A reference guide to setting up and managing a Python environment that integrates cleanly with MATLAB…”
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Free Analysis and Visualization Programs for Electrochemical Impedance Spectroscopy Coded in Python by SUZUKI, Tohru S., KOBAYASHI, Kiyoshi

“…New programs for fitting using an equivalent circuit model and data visualization of electrochemical impedance spectroscopy were developed using Python and its open-source libraries…”
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Data Science Fundamentals with R, Python, and Open Data by Cremonini, Marco

“…Introduction to essential concepts and techniques of the fundamentals of R and Python needed to start data science projectsOrganized with a strong focus on open data, This book discusses concepts…”
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Using Python and AWS for NoSQL in a BI Course by Mitri, Michel

“… Students learn new data formats (Python dictionaries, JSON text data, key-value storage structures…”
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AMEP: The active matter evaluation package for Python by Hecht, Lukas, Dormann, Kay-Robert, Spanheimer, Kai Luca, Ebrahimi, Mahdieh, Cordts, Malte, Mandal, Suvendu, Mukhopadhyay, Aritra K., Liebchen, Benno

“…The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations…”
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VariantValidator: Accurate validation, mapping, and formatting of sequence variation descriptions by Freeman, Peter J., Hart, Reece K., Gretton, Liam J., Brookes, Anthony J., Dalgleish, Raymond

“…‐source hgvs Python package (https://github.com/biocommons/hgvs) provides a programmatic interface for parsing, manipulating, formatting, and validating of variants according to the HGVS recommendations, but does not provide a user…”
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Generative AI with Python and PyTorch - Navigating the AI Frontier with LLMs, Stable Diffusion, and Next‑Gen AI Applications (2nd Edition) by Babcock Joseph, Bali Raghav

“…) and computer vision. Generative AI with Python and PyTorch is your end-to-end guide to creating advanced AI applications, made easy by Raghav Bali, a seasoned data scientist with multiple patents in AI, and Joseph…”
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utils4VASP: Setup and Evaluation of Electronic Structure and Machine-Learned Interatomic Potential Simulations with VASP by Steffen, Julien, Mölkner, Andreas, Bechtel, Maximilian A

“… It contains 14 independent Python scripts and Fortran programs, all with a unified and intuitive handling concept based on command-line arguments…”
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FragHub: A Mass Spectral Library Data Integration Workflow by Dablanc, Axel, Hennechart, Solweig, Perez, Amélie, Cabanac, Guillaume, Guitton, Yann, Paulhe, Nils, Lyan, Bernard, Jamin, Emilien L, Giacomoni, Franck, Marti, Guillaume

“… Despite their importance, the practical application of OMSLs is hampered by the lack of standardized file formats, metadata fields, and supporting ontology…”
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PyPore: a python toolbox for nanopore sequencing data handling by Semeraro, Roberto, Magi, Alberto

“… Results We developed PyPore, a three module python toolbox designed to handle raw FAST5 files from quality checking to alignment to a reference genome and to explore their features…”
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