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TESTING THE DYNAMIC EXECUTION OF PYTHON PROGRAM CODE DURING THE CERTIFICATION TESTING (DEVELOPMENT) STAGE IN THE CERTIFICATION SYSTEM OF THE MINISTRY OF DEFENSE OF RUSSIA by V.V. Samarov

“… When checking applications developed in the Python language for compliance of their code with the requirements of the governing document "Protection against unauthorized access to information. Part 1…”
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MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics by Haiman, Zachary B., Zielinski, Daniel C., Koike, Yuko, Yurkovich, James T., Palsson, Bernhard O.

“… MASSpy adds dynamic modeling tools to the COnstraint-Based Reconstruction and Analysis Python (COBRApy…”
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Tensorpac: An open-source Python toolbox for tensor-based phase-amplitude coupling measurement in electrophysiological brain signals by Combrisson, Etienne, Nest, Timothy, Brovelli, Andrea, Ince, Robin A. A., Soto, Juan L. P., Guillot, Aymeric, Jerbi, Karim

“… In particular, there is accumulating evidence that phase-amplitude coupling (PAC), a specific form of cross-frequency interaction, plays a key role in numerous cognitive processes…”
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CRYSTALpytools: A Python infrastructure for the Crystal code by Camino, Bruno, Zhou, Huanyu, Ascrizzi, Eleonora, Boccuni, Alberto, Bodo, Filippo, Cossard, Alessandro, Mitoli, Davide, Ferrari, Anna Maria, Erba, Alessandro, Harrison, Nicholas M.

“…CRYSTALpytools is an open source Python project available on GitHub that implements a user-friendly interface to the Crystal code for quantum-mechanical condensed matter simulations…”
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PyCDFT: A Python package for constrained density functional theory by Ma, He, Wang, Wennie, Kim, Siyoung, Cheng, Man‐Hin, Govoni, Marco, Galli, Giulia

“…‐principles molecular dynamics code, Qbox, and we benchmark its accuracy by computing the electronic coupling between diabatic states for a set of organic molecules…”
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Constructing and analysing dynamic models with modelbase v1.2.3: a software update by van Aalst, Marvin, Ebenhöh, Oliver, Matuszyńska, Anna

“…Background Computational mathematical models of biological and biomedical systems have been successfully applied to advance our understanding of various regulatory processes, metabolic fluxes, effects…”
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Glycosylator: a Python framework for the rapid modeling of glycans by Lemmin, Thomas, Soto, Cinque

“… Most software for glycan modeling on a personal desktop computer requires knowledge of molecular dynamics to interface with specialized programs such as CHARMM or AMBER…”
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SuperflexPy 1.3.0: an open-source Python framework for building, testing, and improving conceptual hydrological models by Dal Molin, Marco, Kavetski, Dmitri, Fenicia, Fabrizio

“…Catchment-scale hydrological models are widely used to represent and improve our understanding of hydrological processes and to support operational water resource management…”
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GraphPyRec: A novel graph-based approach for fine-grained Python code recommendation by Zong, Xing, Zheng, Shang, Zou, Haitao, Yu, Hualong, Gao, Shang

“… Significant progress has been made in code recommendation for static languages in recent years, but it remains challenging for dynamic languages like Python as accurately determining data flows…”
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PyCSP: A Python package for the analysis and simplification of chemically reacting systems based on Computational Singular Perturbation by Malpica Galassi, Riccardo

“…PyCSP is a Python package for the analysis and simplification of chemically reacting systems, using algorithms based on the Computational Singular Perturbation (CSP) theory…”
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PyReach: A Multi-Agent Framework for Vulnerability Reachability Analysis in Python by Wang, Yueqin, Wu, Jingzheng, Ling, Xiang, Luo, Tianyue, Wang, Xu

“… nature of the Python language and its implicit coding patterns. We present PyReach, a multi-agent collaborative framework that automates vulnerability reachability analysis for Python programs…”
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OPFEM: architectural design and implementation of a CAE software for finite element modeling and simulation by Huang, Wei, Huang, Qun, Yang, Jie, Bai, Xiaowei, He, Tianyun, Hu, Heng

“… (open-source Python-based finite element modeling)—an open-source framework featuring a unified four-layer architecture…”
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A Python tool for parameter estimation of “black box” macro- and micro-kinetic models with Bayesian optimization – petBOA by Kasiraju, Sashank, Wang, Yifan, Bhandari, Saurabh, Singh, Aayush R., Vlachos, Dionisios G.

“…We develop an open-source Python-based Parameter Estimation Tool utilizing Bayesian Optimization (petBOA…”
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PyTrim: A Practical Tool for Reducing Python Dependency Bloat by Karakatsanis, Konstantinos, Alexopoulos, Georgios, Karyotakis, Ioannis, Proestakis, Foivos Timotheos, Talos, Evangelos, Louridas, Panos, Mitropoulos, Dimitris

“… While numerous tools exist for detecting unused dependencies in Python, removing these dependencies across the source code and configuration files of a project requires manual effort and expertise…”
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GenEvaPa: A generic evaporation package for modeling evaporation in molecular dynamics simulations by Harris, Bradley, Liu, Gang-yu, Faller, Roland

“…This work presents a novel general tool for modeling the process of evaporation without the need for modifying existing software using Python…”
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Percolation theory using Python by Malthe-Sørenssen, Anders

“… The book's structure ensures a complete exploration of worked examples, encompassing theory, modeling, implementation, analysis, and the resulting connections between theory and analysis…”
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Derivatives analytics with Python : data analysis, models, simulation, calibration and hedging by Hilpisch, Yves J.

“…Supercharge options analytics and hedging using the power of Python Derivatives Analytics with Python shows you how to implement market-consistent valuation and hedging approaches using advanced…”
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Cantera-Based Python Computer Program for Solving Steam Power Cycles with Superheating by Marzouk, Osama A

“… These remarks establish a motivation for the current study. This article documents a computer code written in the Python programming language…”
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KMCLib: A general framework for lattice kinetic Monte Carlo (KMC) simulations by Leetmaa, Mikael, Skorodumova, Natalia V.

“… The plugin modules are loosely coupled to the core KMCLib program via the Python scripting language…”
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SporTran: A code to estimate transport coefficients from the cepstral analysis of (multivariate) current time series by Ercole, Loris, Bertossa, Riccardo, Bisacchi, Sebastiano, Baroni, Stefano

“…SporTran is a Python utility designed to estimate generic transport coefficients in extended systems, based on the Green-Kubo theory of linear response and the recently introduced cepstral analysis…”
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