Search Results - (( (statnene OR state) python code analysis ) OR ( (statneeeinit OR statni) python code analysis ))

MechElastic: A Python library for analysis of mechanical and elastic properties of bulk and 2D materials by Singh, Sobhit, Lang, Logan, Dovale-Farelo, Viviana, Herath, Uthpala, Tavadze, Pedram, Coudert, François-Xavier, Romero, Aldo H.

“…The MechElastic Python package evaluates the mechanical and elastic properties of bulk and 2D materials using the elastic coefficient matrix (Cij…”
Get full text

scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data by Faure, Louis, Soldatov, Ruslan, Kharchenko, Peter V, Adameyko, Igor

“…Abstract Summary scFates provides an extensive toolset for the analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a…”
Get full text

PHOTONAI—A Python API for rapid machine learning model development by Leenings, Ramona, Winter, Nils Ralf, Plagwitz, Lucas, Holstein, Vincent, Ernsting, Jan, Sarink, Kelvin, Fisch, Lukas, Steenweg, Jakob, Kleine-Vennekate, Leon, Gebker, Julian, Emden, Daniel, Grotegerd, Dominik, Opel, Nils, Risse, Benjamin, Jiang, Xiaoyi, Dannlowski, Udo, Hahn, Tim

“…PHOTONAI is a high-level Python API designed to simplify and accelerate machine learning model development…”
Get full text

SciPy 1.0: fundamental algorithms for scientific computing in Python by Virtanen, Pauli, Gommers, Ralf, Oliphant, Travis E., Haberland, Matt, Reddy, Tyler, Cournapeau, David, Burovski, Evgeni, Peterson, Pearu, Weckesser, Warren, Bright, Jonathan, van der Walt, Stéfan J., Brett, Matthew, Wilson, Joshua, Millman, K. Jarrod, Mayorov, Nikolay, Nelson, Andrew R. J., Jones, Eric, Kern, Robert, Larson, Eric, Carey, C J, Polat, İlhan, Feng, Yu, Moore, Eric W., VanderPlas, Jake, Laxalde, Denis, Perktold, Josef, Cimrman, Robert, Henriksen, Ian, Quintero, E. A., Harris, Charles R., Archibald, Anne M., Ribeiro, Antônio H., Pedregosa, Fabian, van Mulbregt, Paul

“… Since its initial release in 2001, SciPy has become a de facto standard for leveraging scientific algorithms in Python, with over 600 unique code contributors, thousands of dependent packages…”
Get full text

PyNoetic: A modular python framework for no-code development of EEG brain-computer interfaces by Singh, Gursimran, Chharia, Aviral, Upadhyay, Rahul, Kumar, Vinay, Longo, Luca

“… PyNoetic is one of the very few frameworks in Python that encompasses the entire BCI design pipeline, from stimulus presentation and data…”
Get full text

Snakes on a Spaceship - An Overview of Python in Heliophysics by Burrell, A.G., Halford, A., Klenzing, J., Stoneback, R. A., Morley, S. K., Annex, A. M., Laundal, K. M., Kellerman, A. C., Stansby, D., Ma, J.

“…Computational analysis has become ubiquitous within the heliophysics community. However, community standards for peer review of codes and analysis have lagged behind these developments…”
Get full text

galpy: A python LIBRARY FOR GALACTIC DYNAMICS by Bovy, Jo

“…I describe the design, implementation, and usage of galpy, a python package for galactic-dynamics calculations…”
Get full text

Python code smells detection using conventional machine learning models by Sandouka, Rana, Aljamaan, Hamoud

“… This article proposes a Python code smell dataset for Large Class and Long Method code smells…”
Get full text

Short communication: age2exhume – a MATLAB/Python script to calculate steady-state vertical exhumation rates from thermochronometric ages and application to the Himalaya by van der Beek, Peter, Schildgen, Taylor F.

“… datasets in such models remains challenging. Here, we present age2exhume, a thermal model in the form of a MATLAB or Python script, which can be used to rapidly obtain…”
Get full text

VAMPyR-A high-level Python library for mathematical operations in a multiwavelet representation by Bjørgve, Magnar, Tantardini, Christian, Jensen, Stig Rune, Gerez S, Gabriel A, Wind, Peter, Di Remigio Eikås, Roberto, Dinvay, Evgueni, Frediani, Luca

“…), they provide a framework that narrows the gap between the theoretical formalism of the fundamental equations and the practical implementation in a working code…”
Get more information

Gene count estimation with pytximport enables reproducible analysis of bulk RNA sequencing data in Python by Kuehl, Malte, Wong, Milagros N, Wanner, Nicola, Bonn, Stefan, Puelles, Victor G

“… However, their output consists of transcript count estimates that are subject to multiple biases and cannot be readily used with existing differential gene expression analysis tools in Python…”
Get full text

ABrox—A user-friendly Python module for approximate Bayesian computation with a focus on model comparison by Mertens, Ulf Kai, Voss, Andreas, Radev, Stefan

“…We give an overview of the basic principles of approximate Bayesian computation (ABC), a class of stochastic methods that enable flexible and likelihood-free…”
Get full text

Dedenser: A Python Package for Clustering and Downsampling Chemical Libraries by Beck, Armen G, Fine, Jonathan, Lam, Yu-Hong, Sherer, Edward C, Regalado, Erik L, Aggarwal, Pankaj

“…The screening of chemical libraries is an essential starting point in the drug discovery process. While some researchers desire a more thorough screening of…”
Get more information

PyCG: Practical Call Graph Generation in Python by Salis, Vitalis, Sotiropoulos, Thodoris, Louridas, Panos, Spinellis, Diomidis, Mitropoulos, Dimitris

“… We propose a pragmatic, static approach for call graph generation in Python. We compute all assignment relations between program identifiers of functions, variables, classes, and modules through an inter-procedural analysis…”
Get full text

Domain Knowledge Matters: Improving Prompts with Fix Templates for Repairing Python Type Errors by Peng, Yun, Gao, Shuzheng, Gao, Cuiyun, Huo, Yintong, Lyu, Michael R.

“…As a dynamic programming language, Python has become increasingly popular in recent years…”
Get full text

JBrowse Jupyter: a Python interface to JBrowse 2 by De Jesus Martinez, Teresa, Hershberg, Elliot A, Guo, Emma, Stevens, Garrett J, Diesh, Colin, Xie, Peter, Bridge, Caroline, Cain, Scott, Haw, Robin, Buels, Robert M, Stein, Lincoln D, Holmes, Ian H

“…Abstract Motivation JBrowse Jupyter is a package that aims to close the gap between Python programming and genomic visualization…”
Get full text

OTSun, a python package for the optical analysis of solar-thermal collectors and photovoltaic cells with arbitrary geometry by Cardona, Gabriel, Pujol-Nadal, Ramon

“… We present here the open source python package OTSun, which applies the Fresnel equations in their most general form, without further simplifications, and is suitable for the simulation of both solar…”
Get full text

Pyomo.DOE: An open‐source package for model‐based design of experiments in Python by Wang, Jialu, Dowling, Alexander W.

“… To help reduce this barrier, we introduce Pyomo.DOE, an open‐source package for MBDoE. Pyomo.DOE uses a nonlinear sensitivity analysis code k_aug to quickly approximate the Fisher information matrix and leverages a new stochastic programming ion…”
Get full text

MTpy: A Python toolbox for magnetotellurics by Krieger, Lars, Peacock, Jared R.

“… Written in Python, the code is open source, containing sub-packages and modules for various tasks within the standard MT data processing and handling scheme…”
Get full text

PyCDFT: A Python package for constrained density functional theory by Ma, He, Wang, Wennie, Kim, Siyoung, Cheng, Man‐Hin, Govoni, Marco, Galli, Giulia

“…We present PyCDFT, a Python package to compute diabatic states using constrained density functional theory (CDFT…”
Get full text