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Percolation theory using Python by Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
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Utilizing the open-source programming language Python to create interactive Quality Assurance dashboards for diagnostic and screening performance in Cytology by Kovács, István, Székely, Tamás, Pogány, Péter, Takács, Szabolcs, Erős, Mónika, Járay, Balázs

“… As a comprehensive solution, we used the Python programming language to create a dashboard application for screening and diagnostic quality metrics…”
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An image-based modeling framework for patient-specific computational hemodynamics by Antiga, Luca, Piccinelli, Marina, Botti, Lorenzo, Ene-Iordache, Bogdan, Remuzzi, Andrea, Steinman, David A.

“… The framework takes advantage of the integration of image processing, geometric analysis and mesh generation techniques, with an accent on full automation and high-level interaction…”
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Bayesian modelling of time series data (BayModTS)—a FAIR workflow to process sparse and highly variable data by Höpfl, Sebastian, Albadry, Mohamed, Dahmen, Uta, Herrmann, Karl-Heinz, Kindler, Eva Marie, König, Matthias, Reichenbach, Jürgen Rainer, Tautenhahn, Hans-Michael, Wei, Weiwei, Zhao, Wan-Ting, Radde, Nicole Erika

“…Motivation Systems biology aims to better understand living systems through mathematical modelling of experimental and clinical data. A pervasive challenge in…”
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Comprehensive framework of GPU-accelerated image reconstruction for photoacoustic computed tomography by Wang, Yibing, Li, Changhui

“…Photoacoustic computed tomography (PACT) is a promising non-invasive imaging technique for both life science and clinical implementations. To achieve fast…”
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Rapid development of image analysis research tools: Bridging the gap between researcher and clinician with pyOsiriX by Blackledge, Matthew D., Collins, David J., Koh, Dow-Mu, Leach, Martin O.

“…We present pyOsiriX, a plugin built for the already popular dicom viewer OsiriX that provides users the ability to extend the functionality of OsiriX through simple Python scripts…”
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Statistics Using Python by Campesato, Oswald

“…This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors…”
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MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning by Müller, Dominik, Kramer, Frank

“… analysis, metrics, a library with state-of-the-art deep learning models and model utilization like training, prediction, as well as fully automatic evaluation (e.g. cross-validation…”
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A General Theorem and Proof for the Identification of Composed CFA Models by Bee, R. Maximilian, Koch, Tobias, Eid, Michael

“… Composed CFA models are frequently used in the analysis of multimethod data, longitudinal data, or multidimensional psychometric data…”
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Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code by Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“…Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of…”
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What R and Python programming languages bring to the table by Aller, Raymond D, Weiner, Hal

“…The two most widely used open-source big data analysis tools-R and Python-are proving their mettle in the clinical laboratory…”
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Enhanced deep learning model for precise nodule localization and recurrence risk prediction following curative-intent surgery for lung cancer by Park, Jihwan, Rho, Mi Jung, Moon, Mi Hyoung

“… Identifying patients at high risk of recurrence using preoperative computed tomography (CT) images could enable more aggressive surgical approaches, shorter surveillance intervals, and intensified adjuvant treatments…”
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Development of an Interactive Code for Quick Data Analyses between STOR-M Tokamak Experimental Plasma Discharges by Nakajima, Masaru, Basu, Debjyoti, Melnikov, Alexander V., McColl, David, Xiao, Chijin

“…) tokamak operation, Ohmic H-mode triggering by the electrode biasing, fueling and momentum injection by Compact Torus (CT…”
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PyLAT: Python LAMMPS Analysis Tools by Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes…”
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xMEN: a modular toolkit for cross-lingual medical entity normalization by Borchert, Florian, Llorca, Ignacio, Roller, Roland, Arnrich, Bert, Schapranow, Matthieu-P

“…Objective To improve performance of medical entity normalization across many languages, especially when fewer language resources are available compared to…”
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Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics by Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“…Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics…”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres by Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“…We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN…”
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PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations by Reis, Pedro B P S, Vila-Viçosa, Diogo, Rocchia, Walter, Machuqueiro, Miguel

“…The protonation of titratable residues has a significant impact on the structure and function of biomolecules, influencing many physicochemical and ADME…”
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stk: A python toolkit for supramolecular assembly by Turcani, Lukas, Berardo, Enrico, Jelfs, Kim E.

“… stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes…”
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