Search Results - (( (staten OR state) python code analysis ) OR ( state:tn python code analysis ))

2FAST2Q: a general-purpose sequence search and counting program for FASTQ files by Bravo, Afonso M., Typas, Athanasios, Veening, Jan-Willem

“… Despite 2FAST2Q being previously described as part of a CRISPRi-seq analysis pipeline, in here we further elaborate on the program's functionality, and its broader applicability and functions…”
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eqtools: Modular, extensible, open-source, cross-machine Python tools for working with magnetic equilibria by Chilenski, M. A., Faust, I. C., Walk, J. R.

“… in the Python programming language for handling magnetic equilibria and associated data from tokamaks…”
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Enhancing Monte Carlo Workflows for Nuclear Reactor Analysis with Metamodel-Driven Modeling by Kowal, Peter J., Blake, Camden E., Dominesey, Kurt A., Lefebvre, Robert A., Brown, Forrest B., Ji, Wei

“…Monte Carlo codes are essential components of many reactor physics simulation workflows as high-fidelity continuous-energy neutron transport solvers…”
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LIVVkit: An extensible, python‐based, land ice verification and validation toolkit for ice sheet models by Kennedy, Joseph H., Bennett, Andrew R., Evans, Katherine J., Price, Stephen, Hoffman, Matthew, Lipscomb, William H., Fyke, Jeremy, Vargo, Lauren, Boghozian, Adrianna, Norman, Matthew, Worley, Patrick H.

“…), the corresponding verification and validation (V&V) process is being coordinated through a new, robust, Python…”
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Percolation theory using Python by Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
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pyPheWAS: A Phenome-Disease Association Tool for Electronic Medical Record Analysis by Kerley, Cailey I., Chaganti, Shikha, Nguyen, Tin Q., Bermudez, Camilo, Cutting, Laurie E., Beason-Held, Lori L., Lasko, Thomas, Landman, Bennett A.

“… In this article, we introduce pyPheWAS , an open-source python package for conducting PheDAS and related analyses…”
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Shutdown dose rate analysis with the Shift Monte Carlo radiation transport code and modular verification workflow by Bae, Jin Whan, Kos, Bor, Biondo, Elliott

“… These features make it an attractive transport solver choice for an R2S workflow. An R2S workflow for the Shift Monte Carlo code is developed and compared to the existing Oak Ridge National Laboratory Shutdown Dose Rate Code Suite (ORCS) workflow…”
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The TDHF code Sky3D version 1.2 by Abhishek, Stevenson, Paul, Shi, Yue, Yüksel, Esra, Umar, A.S.

“…The Sky3D code has been widely used to describe nuclear ground states, collective vibrational excitations, and heavy-ion collisions…”
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Modeling for insight using Tools for Energy Model Optimization and Analysis (Temoa) by Hunter, Kevin, Sreepathi, Sarat, DeCarolis, Joseph F.

“…This paper introduces Tools for Energy Model Optimization and Analysis (Temoa), an open source framework for conducting energy system analysis…”
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Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code by Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“…Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of…”
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Sensitivity analysis of thermal contact conductance modeling to inform MiniFuel irradiation capsule designs by Meehan, Nicholas A., Gorton, Jacob P., Capps, Nathan A., Brown, Nicholas R.

“…•Sensitivity analysis to identify high-impact parameters that contribute to fuel temperature variance…”
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A machine learning approach to galaxy properties: joint redshift–stellar mass probability distributions with Random Forest by Mucesh, S, Hartley, W G, Palmese, A, Lahav, O, Whiteway, L, Bluck, A F L, Alarcon, A, Amon, A, Bechtol, K, Bernstein, G M, Carnero Rosell, A, Carrasco Kind, M, Choi, A, Eckert, K, Everett, S, Gruen, D, Gruendl, R A, Harrison, I, Huff, E M, Kuropatkin, N, Sevilla-Noarbe, I, Sheldon, E, Yanny, B, Aguena, M, Allam, S, Bacon, D, Bertin, E, Bhargava, S, Brooks, D, Carretero, J, Castander, F J, Conselice, C, Costanzi, M, Crocce, M, da Costa, L N, Pereira, M E S, De Vicente, J, Desai, S, Diehl, H T, Drlica-Wagner, A, Evrard, A E, Ferrero, I, Flaugher, B, Fosalba, P, Frieman, J, García-Bellido, J, Gaztanaga, E, Gerdes, D W, Gschwend, J, Gutierrez, G, Hinton, S R, Hollowood, D L, Honscheid, K, James, D J, Kuehn, K, Lima, M, Lin, H, Maia, M A G, Melchior, P, Menanteau, F, Miquel, R, Morgan, R, Paz-Chinchón, F, Plazas, A A, Sanchez, E, Scarpine, V, Schubnell, M, Serrano, S, Smith, M, Suchyta, E, Tarle, G, Thomas, D, To, C, Varga, T N, Wilkinson, R D

“…ABSTRACT We demonstrate that highly accurate joint redshift–stellar mass probability distribution functions (PDFs) can be obtained using the Random Forest (RF)…”
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PyLAT: Python LAMMPS Analysis Tools by Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes…”
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Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics by Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“…Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics…”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres by Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“…We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN…”
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Statistics Using Python by Campesato, Oswald

“…This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors…”
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PypKa: A Flexible Python Module for Poisson-Boltzmann-Based pKa Calculations by Reis, Pedro B P S, Vila-Viçosa, Diogo, Rocchia, Walter, Machuqueiro, Miguel

“…The protonation of titratable residues has a significant impact on the structure and function of biomolecules, influencing many physicochemical and ADME…”
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Cluster Analysis of Combined EDS and EBSD Data to Solve Ambiguous Phase Identifications by Parish, Chad M.

“… This paper describes a simple data analytics-based method, using a combination of singular value decomposition and cluster analysis, to merge simultaneously acquired EDS…”
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stk: A python toolkit for supramolecular assembly by Turcani, Lukas, Berardo, Enrico, Jelfs, Kim E.

“… stk is a modular, extensible and open‐source Python library that provides a simple Python API and integration with third party computational codes…”
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