Search Results - (( (staten OR stat) python code analysis ) OR ( state:oh python code analysis ))

Percolation theory using Python by Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
Get full text

Decoding the JAK-STAT Axis in Colorectal Cancer with AI-HOPE-JAK-STAT: A Conversational Artificial Intelligence Approach to Clinical–Genomic Integration by Yang, Ei-Wen, Waldrup, Brigette, Velazquez-Villarreal, Enrique

“…: AI-HOPE-JAK-STAT combines large language models (LLMs), a natural language-to-code engine, and harmonized public CRC datasets from cBioPortal…”
Get full text

Introduction to computational causal inference using reproducible Stata, R, and Python code: A tutorial by Smith, Matthew J., Mansournia, Mohammad A., Maringe, Camille, Zivich, Paul N., Cole, Stephen R., Leyrat, Clémence, Belot, Aurélien, Rachet, Bernard, Luque‐Fernandez, Miguel A.

“…The main purpose of many medical studies is to estimate the effects of a treatment or exposure on an outcome. However, it is not always possible to randomize…”
Get full text

LiPydomics: A Python Package for Comprehensive Prediction of Lipid Collision Cross Sections and Retention Times and Analysis of Ion Mobility-Mass Spectrometry-Based Lipidomics Data by Ross, Dylan H, Cho, Jang Ho, Zhang, Rutan, Hines, Kelly M, Xu, Libin

“… Existing solutions for these data analysis challenges (i.e., multivariate statistics and lipid identification…”
Get more information

VeVaPy, a Python Platform for Efficient Verification and Validation of Systems Biology Models with Demonstrations Using Hypothalamic-Pituitary-Adrenal Axis Models by Parker, Christopher, Nelson, Erik, Zhang, Tongli

“… VeVaPy includes four functional modules coded in Python, and the source code is publicly available…”
Get full text

Automated Estimation of Aquifer Parameters from Arbitrary‐Rate Pumping Tests in Python and MATLAB by Benson, David A.

“…Inspired by the analysis by Mishra et al. (2012) of variable pumping rate tests using piecewise…”
Get full text

ogs5py: A Python‐API for the OpenGeoSys 5 Scientific Modeling Package by Müller, Sebastian, Zech, Alraune, Heße, Falk

“…High‐performance numerical codes are an indispensable tool for hydrogeologists when modeling subsurface flow and transport systems…”
Get full text

Visualization of Aqueous Geochemical Data Using Python and WQChartPy by Yang, Jing, Liu, Honghua, Tang, Zhonghua, Peeters, Luk, Ye, Ming

“… This method note presents WQChartPy, an open‐source Python package developed to plot a total of 12 diagrams for analysis of aqueous geochemical data…”
Get full text

Statistics Using Python by Campesato, Oswald

“…This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors…”
Get full text

Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data by Pakkir Shah, Abzer K., Walter, Axel, Ottosson, Filip, Russo, Francesco, Navarro-Diaz, Marcelo, Boldt, Judith, Kalinski, Jarmo-Charles J., Kontou, Eftychia Eva, Elofson, James, Polyzois, Alexandros, González-Marín, Carolina, Farrell, Shane, Aggerbeck, Marie R., Pruksatrakul, Thapanee, Chan, Nathan, Wang, Yunshu, Pöchhacker, Magdalena, Brungs, Corinna, Cámara, Beatriz, Caraballo-Rodríguez, Andrés Mauricio, Cumsille, Andres, de Oliveira, Fernanda, Dührkop, Kai, El Abiead, Yasin, Geibel, Christian, Graves, Lana G., Hansen, Martin, Heuckeroth, Steffen, Knoblauch, Simon, Kostenko, Anastasiia, Kuijpers, Mirte C. M., Mildau, Kevin, Papadopoulos Lambidis, Stilianos, Portal Gomes, Paulo Wender, Schramm, Tilman, Steuer-Lodd, Karoline, Stincone, Paolo, Tayyab, Sibgha, Vitale, Giovanni Andrea, Wagner, Berenike C., Xing, Shipei, Yazzie, Marquis T., Zuffa, Simone, de Kruijff, Martinus, Beemelmanns, Christine, Link, Hannes, Mayer, Christoph, van der Hooft, Justin J. J., Damiani, Tito, Pluskal, Tomáš, Dorrestein, Pieter, Stanstrup, Jan, Schmid, Robin, Wang, Mingxun, Aron, Allegra, Ernst, Madeleine, Petras, Daniel

“… We provide explanations and code in two scripting languages (R and Python) as well…”
Get full text

SNPAAMapper-Python: A highly efficient genome-wide SNP variant analysis pipeline for Next-Generation Sequencing data by Li, Chang, Ma, Kevin, Xu, Nicole, Fu, Chenjian, He, Andrew, Liu, Xiaoming, Bai, Yongsheng

“… In this study, we updated SNPAAMapper, a variant annotation pipeline by converting perl codes to python for generating annotation output with an improved computational efficiency and updated…”
Get full text

Pastas: Open Source Software for the Analysis of Groundwater Time Series by Collenteur, Raoul A., Bakker, Mark, Caljé, Ruben, Klop, Stijn A., Schaars, Frans

“…), and the detection of trends and outliers. Pastas is a new and open source Python package for the analysis of hydrogeological time series…”
Get full text

Nestedness for Dummies (NeD): A user friendly web interface for exploratory nestedness analysis by Strona, Giovanni, Galli, Paolo, Seveso, Davide, Montano, Simone, Fattorini, Simone

“…Recent theoretical advances in nestedness analysis have led to the introduction of several alternative metrics to overcome most of the problems biasing the use of matrix 'temperature' calculated…”
Get full text

From code to reliability: Python-powered Paraconsistent Logic for alarm detection in the power gris/ Do codigo a confiabilidade: Logica Paraconsistente impulsionada por Python para a deteccao de alarmes na rede de energia by de Oliveira, Joseffe Barroso, Gino, Joao Vitor Santa Rosa, de Lima, Carlos Jose, Filho, Joao Inacio da Silva

“… This application enables the comparison of triggered alarms with the resultant logical states obtained during the analysis…”
Get full text

Writing Analytic Element Programs in Python by Bakker, Mark, Kelson, Victor A

“… With the advent of the Python object-oriented programming language, it has become relatively easy to write analytic element programs…”
Get full text

A Generic Closed‐Loop Contaminant Treatment System Package for MODFLOW 6 by White, Jeremy T., Ewing, John E., Ruskauff, Greg, Rashid, Helal

“…We present a contaminant treatment system (CTS) package for MODFLOW 6 that facilitates the simulation of pump‐and‐treat systems for groundwater remediation…”
Get full text

Statistical Analyses and Reproducible Research by Gentleman, Robert, Temple Lang, Duncan

“…It is important, if not essential, to integrate the computations and code used in data analyses, methodological descriptions, simulations, and so on with the documents that describe and rely…”
Get full text

Coupling a Borehole Thermal Model and MT3DMS to Simulate Dynamic Ground Source Heat Pump Efficiency by Zong, Yifei, Valocchi, Albert J., Lin, Yu‐Feng F.

“… In our approach, MT3DMS is the simulator for the two‐dimensional field‐scale heat transport, while new Python modules are developed to analytically solve the thermal transfer process within boreholes and interface iteratively with MT3DMS…”
Get full text

Facilitating the Calculation of the Efficient Score Using Symbolic Computing by B. Sibley, Alexander, Li, Zhiguo, Jiang, Yu, Li, Yi-Ju, Chan, Cliburn, Allen, Andrew, Owzar, Kouros

“… In the analysis of data from high-throughput genomic assays, inference on the basis of the score usually enjoys greater stability, considerably higher computational efficiency, and lends itself…”
Get full text

lefser: implementation of metagenomic biomarker discovery tool, LEfSe, in R by Khleborodova, Asya, Gamboa-Tuz, Samuel D, Ramos, Marcel, Segata, Nicola, Waldron, Levi, Oh, Sehyun

“…Summary LEfSe is a widely used Python package and Galaxy module for metagenomic biomarker discovery and visualization, utilizing the Kruskal…”
Get full text