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cwepr – A Python package for analysing cw-EPR data focussing on reproducibility and simple usage by Schröder, Mirjam, Biskup, Till

“…[Display omitted] •Open-source software package for processing and analysis of cw-EPR data…”
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Percolation theory using Python by Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
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Statistics Using Python by Campesato, Oswald

“…This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors…”
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From code to reliability: Python-powered Paraconsistent Logic for alarm detection in the power gris/ Do codigo a confiabilidade: Logica Paraconsistente impulsionada por Python para a deteccao de alarmes na rede de energia by de Oliveira, Joseffe Barroso, Gino, Joao Vitor Santa Rosa, de Lima, Carlos Jose, Filho, Joao Inacio da Silva

“… This application enables the comparison of triggered alarms with the resultant logical states obtained during the analysis…”
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A Python Multiscale Thermochemistry Toolbox (pMuTT) for thermochemical and kinetic parameter estimation by Lym, Jonathan, Wittreich, Gerhard R., Vlachos, Dionisios G.

“… Its open-source implementation in Python leverages existing scientific codes, encourages users to write scripts for their needs, and allows the code to be expanded easily…”
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Leveraging machine learning for accurate DNBR prediction using python by Mohamed Y.M. Mohsen, Meshari Al Meshari, Yasser Alzamil, Abdulrahman Alhammad, Khaled Alenazi, Atef El-Taher, Tarek F. Nagla, Mohamed A.E. Abdel-Rahman

“…This study investigates the viability of using Python scikit-learn packages, specifically regression techniques, to forecast the departure from nucleate boiling ratio (DNBR…”
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Computational Tools for the Multiscale Analysis of Hi-C Data in Bacterial Chromosomes by Varoquaux, Nelle, Lioy, Virginia S, Boccard, Frédéric, Junier, Ivan

“… Our objective is twofold. On the one hand, we aim at providing a full, understandable Python/Jupyter-based code which can be used by both computer scientists and biologists with no advanced computational background…”
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Sensitivity and uncertainty analysis in pebble-bed reactors: A study using the High-Temperature Code Package (HCP) by Yaseen, Mahmoud, Sadek, Amr, Osman, Wafaa, Altahhan, Muhammad, Wu, Xu, Avramova, Maria, Ivanov, Kostadin

“…) and Sensitivity Analysis (SA). This research aims to implement a statistical framework within HCP by leveraging the DAKOTA toolkit and Python libraries, thereby enabling UQ/SA workflows to evaluate how uncertainties influence…”
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A demonstration of modularity, reuse, reproducibility, portability and scalability for modeling and simulation of cardiac electrophysiology using Kepler Workflows by Yang, Pei-Chi, Purawat, Shweta, Ieong, Pek U., Jeng, Mao-Tsuen, DeMarco, Kevin R., Vorobyov, Igor, McCulloch, Andrew D., Altintas, Ilkay, Amaro, Rommie E., Clancy, Colleen E.

“… It invariably involves specific and detailed sequences of data analysis and simulation, often with multiple tools and datasets, and the community recognizes improved modularity, reuse…”
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Using DeepLabCut for 3D markerless pose estimation across species and behaviors by Nath, Tanmay, Mathis, Alexander, Chen, An Chi, Patel, Amir, Bethge, Matthias, Mathis, Mackenzie Weygandt

“… We recently introduced an open-source toolbox called DeepLabCut that builds on a state-of-the-art human pose-estimation algorithm to allow a user to train a deep neural network with limited training…”
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Is Multitask Deep Learning Practical for Pharma? by Ramsundar, Bharath, Liu, Bowen, Wu, Zhenqin, Verras, Andreas, Tudor, Matthew, Sheridan, Robert P, Pande, Vijay

“… Our implementation enables simple python scripts to construct, fit, and evaluate sophisticated deep models…”
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Error correction schemes for fully correlated quantum channels protecting both quantum and classical information by Li, Chi-Kwong, Lyles, Seth, Poon, Yiu-Tung

“… + 1 , we describe a quantum error correction scheme using one arbitrary qubit σ to protect the data state ρ…”
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SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata by Hitz, Benjamin C., Rowe, Laurence D., Podduturi, Nikhil R., Glick, David I., Baymuradov, Ulugbek K., Malladi, Venkat S., Chan, Esther T., Davidson, Jean M., Gabdank, Idan, Narayana, Aditi K., Onate, Kathrina C., Hilton, Jason, Ho, Marcus C., Lee, Brian T., Miyasato, Stuart R., Dreszer, Timothy R., Sloan, Cricket A., Strattan, J. Seth, Tanaka, Forrest Y., Hong, Eurie L., Cherry, J. Michael

“… and transcriptional landscape of the H. sapiens and M. musculus genomes. All ENCODE experimental data, metadata, and associated computational analyses are submitted to the ENCODE Data Coordination Center (DCC…”
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Disentangling signal and noise in neural responses through generative modeling by Kay, Kendrick, Prince, Jacob S., Gebhart, Thomas, Tuckute, Greta, Zhou, Jingyang, Naselaris, Thomas, Schütt, Heiko H.

“…Measurements of neural responses to identically repeated experimental events often exhibit large amounts of variability. This noise is distinct from signal ,…”
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ROOT — A C++ framework for petabyte data storage, statistical analysis and visualization by Antcheva, I., Ballintijn, M., Bellenot, B., Biskup, M., Brun, R., Buncic, N., Canal, Ph, Casadei, D., Couet, O., Fine, V., Franco, L., Ganis, G., Gheata, A., Maline, D. Gonzalez, Goto, M., Iwaszkiewicz, J., Kreshuk, A., Segura, D. Marcos, Maunder, R., Moneta, L., Naumann, A., Offermann, E., Onuchin, V., Panacek, S., Rademakers, F., Russo, P., Tadel, M.

“…A new stable version (“production version”) v5.28.00 of ROOT [1] has been published [2]. It features several major improvements in many areas, most noteworthy…”
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Study on Exploratory Data Analysis Applied to Education by Otero-Escobar, Alma Delia, Velasco-Ramirez, Maria Luisa

“… Exploratory data analysis is a key stage of data mining, where statistics and graphical tools are used to understand the data, identify errors, detect outliers, and find relationships between variables…”
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Evaluating sentence representations for biomedical text: Methods and experimental results by Tawfik, Noha S., Spruit, Marco R.

“…[Display omitted] •MedSentEval is a python-based toolkit for evaluating representations in the biomedical domain…”
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Dataflow programming for the analysis of molecular dynamics with AViS, an analysis and visualization software application by Kai Pua, Daisuke Yuhara, Sho Ayuba, Kenji Yasuoka

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Spatial Analysis Using Big Data by Hajime Seya, Yoshiki Yamagata

“…Spatial Analysis Using Big Data: Methods and Urban Applications helps readers understand the most powerful, state-of-the-art spatial econometric methods, focusing particularly on urban research problems…”
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Machine learning : a Bayesian and optimization perspective by Theodoridis, Sergios

“…Machine Learning: A Bayesian and Optimization Perspective, Second Edition, gives a unifying perspective on machine learning by covering both probabilistic and…”
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