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Percolation theory using Python
ISBN: 3031598997, 9783031598999, 3031599004, 9783031599002Published: Cham Springer 2024“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
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scFates: a scalable python package for advanced pseudotime and bifurcation analysis from single-cell data
ISSN: 1367-4811, 1367-4803, 1367-4811Published: England Oxford University Press 01.01.2023Published in Bioinformatics (Oxford, England) (01.01.2023)“…Abstract Summary scFates provides an extensive toolset for the analysis of dynamic trajectories comprising tree learning, feature association testing, branch differential expression and with a…”
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3
BatAnalysis: A Comprehensive Python Pipeline for Swift BAT Survey Analysis
ISSN: 0004-637X, 1538-4357Published: Goddard Space Flight Center The American Astronomical Society 01.08.2023Published in The Astrophysical journal (01.08.2023)“…The Swift Burst Alert Telescope (BAT) is a coded aperture gamma-ray instrument with a large field of view that primarily operates in survey mode when it is not…”
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PyGEE-SWToolbox: A Python Jupyter Notebook Toolbox for Interactive Surface Water Mapping and Analysis Using Google Earth Engine
ISSN: 2071-1050, 2071-1050Published: Basel MDPI AG 01.03.2022Published in Sustainability (01.03.2022)“… challenges. PyGEE-SWToolbox is a freely available Google Earth Engine-enabled open-source toolbox developed with Python to be run in Jupyter Notebooks that provides an easy-to-use graphical user interface (GUI…”
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5
Biopython: freely available Python tools for computational molecular biology and bioinformatics
ISSN: 1367-4803, 1367-4811, 1460-2059, 1367-4811Published: Oxford Oxford University Press 01.06.2009Published in Bioinformatics (01.06.2009)“…The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems…”
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Analysis of ChatGPT-Generated Codes Across Multiple Programming Languages
ISSN: 2169-3536, 2169-3536Published: Piscataway IEEE 2025Published in IEEE access (2025)“… This research investigates ChatGPT-4o, a state-of-the-art language model, and its ability to generate functional, high-quality code in different programming languages…”
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SCS-Gan: Learning Functionality-Agnostic Stylometric Representations for Source Code Authorship Verification
ISSN: 0098-5589, 1939-3520Published: New York IEEE 01.04.2023Published in IEEE transactions on software engineering (01.04.2023)“… In the literature, automated Code Authorship Analysis (CAA) techniques have been proposed to reduce the manual effort in identifying those attacks and issues…”
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Information-Theoretical Analysis of EEG Microstate Sequences in Python
ISSN: 1662-5196, 1662-5196Published: Lausanne Frontiers Research Foundation 01.06.2018Published in Frontiers in neuroinformatics (01.06.2018)“…We present an open-source Python package to compute information-theoretical quantities for electroencephalographic data…”
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Artificial intelligence programming with Python: from zero to hero
ISBN: 1119820863, 9781119820864, 1119820944, 9781119820949Published: Hoboken Wiley 2022“…A hands-on roadmap to using Python for artificial intelligence programming In Practical Artificial Intelligence Programming with Python…”
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UNDI: An open-source library to simulate muon-nuclear interactions in solids
ISSN: 0010-4655Published: Elsevier B.V 01.03.2021Published in Computer physics communications (01.03.2021)“… spin rotation and relaxation spectroscopy experiments. The code can perform both exact and approximated estimates of the muon polarization function in presence of external fields and electric field gradients on the nuclei surrounding the muon…”
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PhosX: data-driven kinase activity inference from phosphoproteomics experiments
ISSN: 1367-4811, 1367-4803, 1367-4811Published: England Oxford University Press 28.11.2024Published in Bioinformatics (Oxford, England) (28.11.2024)“… We present PhosX, a method to estimate differential kinase activity from phosphoproteomics data that combines state-of-the-art statistics in enrichment analysis with kinases…”
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SlipCover: Near Zero-Overhead Code Coverage for Python
ISSN: 2331-8422Published: Ithaca Cornell University Library, arXiv.org 31.05.2023Published in arXiv.org (31.05.2023)“… (a recent study observes a roughly 30x slowdown vs. native code). We find that the state-of-the-art coverage tool for Python, coverage…”
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Leveraging machine learning for accurate DNBR prediction using python
ISSN: 1738-5733, 2234-358XPublished: 2025Published in Nuclear engineering and technology (2025)“…This study investigates the viability of using Python scikit-learn packages, specifically regression techniques, to forecast the departure from nucleate boiling ratio (DNBR…”
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Scikit-network: Graph Analysis in Python
ISSN: 2331-8422Published: Ithaca Cornell University Library, arXiv.org 14.09.2020Published in arXiv.org (14.09.2020)“…Scikit-network is a Python package inspired by scikit-learn for the analysis of large graphs…”
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PromSec: Prompt Optimization for Secure Generation of Functional Source Code with Large Language Models (LLMs)
ISSN: 2331-8422Published: Ithaca Cornell University Library, arXiv.org 19.09.2024Published in arXiv.org (19.09.2024)“…The capability of generating high-quality source code using large language models (LLMs…”
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Solving Spatial Optimization Problems via Lagrangian Relaxation and Automatic Gradient Computation
ISSN: 2220-9964, 2220-9964Published: Basel MDPI AG 01.01.2025Published in ISPRS international journal of geo-information (01.01.2025)“…Spatial optimization is an integral part of GIS and spatial analysis. It involves making various decisions in space, ranging from the location of public facilities to vehicle routing and political districting…”
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Automatic Fortran to C++ conversion with FABLE
ISSN: 1751-0473, 1751-0473Published: London BioMed Central 28.05.2012Published in Source code for biology and medicine (28.05.2012)“… runtime performances. Conclusions Our experience suggests that most Fortran 77 codes can be converted…”
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A novel framework for educational Q&A: Leveraging RAG and Code Interpreters for knowledge retrieval and logical computation
ISSN: 1932-6203, 1932-6203Published: United States Public Library of Science 01.12.2025Published in PloS one (01.12.2025)“… Additionally, the integration of an LLM Code Interpreter enables the system to perform multi-step logical reasoning and execute Python code for precise calculations…”
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Multi-Granularity Detector for Vulnerability Fixes
ISSN: 0098-5589, 1939-3520Published: New York IEEE 01.08.2023Published in IEEE transactions on software engineering (01.08.2023)“… Software Composition Analysis (SCA) tools have been created to alert users of such vulnerabilities…”
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Human discrimination and modeling of high-frequency complex tones shed light on the neural codes for pitch
ISSN: 1553-7358, 1553-734X, 1553-7358Published: United States Public Library of Science 03.03.2022Published in PLoS computational biology (03.03.2022)“… residual temporal information, or a coarser rate-place code, underlies this ability. We addressed this question by measuring human pitch discrimination at low and high…”
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