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Percolation theory using Python by Malthe-Sørenssen, Anders

“… Readers will learn how to generate, analyze, and comprehend data and models, with detailed theoretical discussions complemented by accessible computer codes…”
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LiPydomics: A Python Package for Comprehensive Prediction of Lipid Collision Cross Sections and Retention Times and Analysis of Ion Mobility-Mass Spectrometry-Based Lipidomics Data by Ross, Dylan H, Cho, Jang Ho, Zhang, Rutan, Hines, Kelly M, Xu, Libin

“… Existing solutions for these data analysis challenges (i.e., multivariate statistics and lipid identification…”
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Decoding the JAK-STAT Axis in Colorectal Cancer with AI-HOPE-JAK-STAT: A Conversational Artificial Intelligence Approach to Clinical–Genomic Integration by Yang, Ei-Wen, Waldrup, Brigette, Velazquez-Villarreal, Enrique

“…: AI-HOPE-JAK-STAT combines large language models (LLMs), a natural language-to-code engine, and harmonized public CRC datasets from cBioPortal…”
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Statistics Using Python by Campesato, Oswald

“…This book is designed to offer a fast-paced yet thorough introduction to essential statistical concepts using Python code samples, and aims to assist data scientists in their daily endeavors…”
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From code to reliability: Python-powered Paraconsistent Logic for alarm detection in the power gris/ Do codigo a confiabilidade: Logica Paraconsistente impulsionada por Python para a deteccao de alarmes na rede de energia by de Oliveira, Joseffe Barroso, Gino, Joao Vitor Santa Rosa, de Lima, Carlos Jose, Filho, Joao Inacio da Silva

“… This application enables the comparison of triggered alarms with the resultant logical states obtained during the analysis…”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres by Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“…We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN…”
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CoastSat: A Google Earth Engine-enabled Python toolkit to extract shorelines from publicly available satellite imagery by Vos, Kilian, Splinter, Kristen D., Harley, Mitchell D., Simmons, Joshua A., Turner, Ian L.

“…CoastSat is an open-source software toolkit written in Python that enables the user to obtain time-series of shoreline position at any sandy coastline worldwide from 30+ years (and growing…”
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p-winds: An open-source Python code to model planetary outflows and upper atmospheres by Dos Santos, Leonardo A., Vidotto, Aline A., Vissapragada, Shreyas, Alam, Munazza K., Allart, Romain, Bourrier, Vincent, Kirk, James, Seidel, Julia V., Ehrenreich, David

“… S) at 1083 nm has emerged as a reliable technique for observing and measuring escape. To aid in the prediction and interpretation of metastable He transmission spectroscopy observations, we developed the code p-winds…”
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Accurate 3D fireball trajectory and orbit calculation using the 3D-firetoc automatic Python code by Peña-Asensio, Eloy, Trigo-Rodríguez, Josep Maria, Gritsevich, Maria, Rimola, Albert

“…), an automatic Python code for detection, trajectory reconstruction of meteors, and heliocentric orbit computation from video recordings…”
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Pytrf: a python package for finding tandem repeats from genomic sequences by Du, Lianming, Sun, Dalin, Chen, Jiahao, Zhou, Xinyi, Zhao, Kelei, Zeng, Qianglin, Yang, Nan

“… However, there is a lack of an efficient tandem repeat identification tool for seamless integration with larger bioinformatics programs developed with the popular Python language…”
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Introduction to computational causal inference using reproducible Stata, R, and Python code: A tutorial by Smith, Matthew J., Mansournia, Mohammad A., Maringe, Camille, Zivich, Paul N., Cole, Stephen R., Leyrat, Clémence, Belot, Aurélien, Rachet, Bernard, Luque‐Fernandez, Miguel A.

“…The main purpose of many medical studies is to estimate the effects of a treatment or exposure on an outcome. However, it is not always possible to randomize…”
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Py4CAtS—PYthon for Computational ATmospheric Spectroscopy by Schreier, Franz, Gimeno García, Sebastián, Hochstaffl, Philipp, Städt, Steffen

“… Here we present Py4CAtS—PYthon scripts for Computational ATmospheric Spectroscopy, a Python re-implemen-tation of the Fortran Generic Atmospheric Radiation Line-by-line Code GARLIC, where computationally-intensive code…”
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PyGEE-SWToolbox: A Python Jupyter Notebook Toolbox for Interactive Surface Water Mapping and Analysis Using Google Earth Engine by Owusu, Collins, Snigdha, Nusrat J., Martin, Mackenzie T., Kalyanapu, Alfred J.

“… challenges. PyGEE-SWToolbox is a freely available Google Earth Engine-enabled open-source toolbox developed with Python to be run in Jupyter Notebooks that provides an easy-to-use graphical user interface (GUI…”
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Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code by Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“…Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of…”
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RADWave: Python code for ocean surface wave analysis by satellite radar altimeter by Smith, Courtney, Salles, Tristan, Vila-Concejo, Ana

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PyRTlib: an educational Python-based library for non-scattering atmospheric microwave radiative transfer computations by Larosa, Salvatore, Cimini, Domenico, Gallucci, Donatello, Nilo, Saverio Teodosio, Romano, Filomena

“… (under non-scattering Rayleigh approximation). The intention for PyRTlib is not to be a competitor to state-of-the-art atmospheric radiative transfer codes that excel in speed and/or versatility (e.g…”
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PyLAT: Python LAMMPS Analysis Tools by Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes…”
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JUST: MATLAB and python software for change detection and time series analysis by Ghaderpour, Ebrahim

“…Change detection within unequally spaced and non-stationary time series is crucial in various applications, such as environmental monitoring and satellite navigation…”
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The open-source sunbather code: Modeling escaping planetary atmospheres and their transit spectra by Linssen, Dion, Shih, Jim, MacLeod, Morgan, Oklopčić, Antonija

“…-source Python code that can be used to model escaping exoplanet atmospheres and their transit spectra. sunbather incorporates the Parker wind code p-winds…”
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