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Utilizing the open-source programming language Python to create interactive Quality Assurance dashboards for diagnostic and screening performance in Cytology by Kovács, István, Székely, Tamás, Pogány, Péter, Takács, Szabolcs, Erős, Mónika, Járay, Balázs

“… As a comprehensive solution, we used the Python programming language to create a dashboard application for screening and diagnostic quality metrics…”
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An image-based modeling framework for patient-specific computational hemodynamics by Antiga, Luca, Piccinelli, Marina, Botti, Lorenzo, Ene-Iordache, Bogdan, Remuzzi, Andrea, Steinman, David A.

“… The framework takes advantage of the integration of image processing, geometric analysis and mesh generation techniques, with an accent on full automation and high-level interaction…”
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Bayesian modelling of time series data (BayModTS)—a FAIR workflow to process sparse and highly variable data by Höpfl, Sebastian, Albadry, Mohamed, Dahmen, Uta, Herrmann, Karl-Heinz, Kindler, Eva Marie, König, Matthias, Reichenbach, Jürgen Rainer, Tautenhahn, Hans-Michael, Wei, Weiwei, Zhao, Wan-Ting, Radde, Nicole Erika

“…Motivation Systems biology aims to better understand living systems through mathematical modelling of experimental and clinical data. A pervasive challenge in…”
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Comprehensive framework of GPU-accelerated image reconstruction for photoacoustic computed tomography by Wang, Yibing, Li, Changhui

“…Photoacoustic computed tomography (PACT) is a promising non-invasive imaging technique for both life science and clinical implementations. To achieve fast…”
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Rapid development of image analysis research tools: Bridging the gap between researcher and clinician with pyOsiriX by Blackledge, Matthew D., Collins, David J., Koh, Dow-Mu, Leach, Martin O.

“…We present pyOsiriX, a plugin built for the already popular dicom viewer OsiriX that provides users the ability to extend the functionality of OsiriX through simple Python scripts…”
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A new database website for nuclear level densities by Rathi, Chirag, Voinov, Alexander, Godbey, Kyle, Meisel, Zach, Leibensperger, Kristen

“… Built using the Dash framework in Python, the database is designed to be interactive and user-friendly, allowing researchers to search, visualize, fit, and export NLD data with minimal effort…”
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MIScnn: a framework for medical image segmentation with convolutional neural networks and deep learning by Müller, Dominik, Kramer, Frank

“… analysis, metrics, a library with state-of-the-art deep learning models and model utilization like training, prediction, as well as fully automatic evaluation (e.g. cross-validation…”
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A General Theorem and Proof for the Identification of Composed CFA Models by Bee, R. Maximilian, Koch, Tobias, Eid, Michael

“… Composed CFA models are frequently used in the analysis of multimethod data, longitudinal data, or multidimensional psychometric data…”
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Identification of Novel Microcystins Using High-Resolution MS and MSn with Python Code by Baliu-Rodriguez, David, Peraino, Nicholas J, Premathilaka, Sanduni H, Birbeck, Johnna A, Baliu-Rodriguez, Tomás, Westrick, Judy A, Isailovic, Dragan

“…Cyanotoxins called microcystins (MCs) are highly toxic and can be present in drinking water sources. Determining the structure of MCs is paramount because of…”
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Enhanced deep learning model for precise nodule localization and recurrence risk prediction following curative-intent surgery for lung cancer by Park, Jihwan, Rho, Mi Jung, Moon, Mi Hyoung

“… Identifying patients at high risk of recurrence using preoperative computed tomography (CT) images could enable more aggressive surgical approaches, shorter surveillance intervals, and intensified adjuvant treatments…”
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What R and Python programming languages bring to the table by Aller, Raymond D, Weiner, Hal

“…The two most widely used open-source big data analysis tools-R and Python-are proving their mettle in the clinical laboratory…”
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Development of an Interactive Code for Quick Data Analyses between STOR-M Tokamak Experimental Plasma Discharges by Nakajima, Masaru, Basu, Debjyoti, Melnikov, Alexander V., McColl, David, Xiao, Chijin

“…) tokamak operation, Ohmic H-mode triggering by the electrode biasing, fueling and momentum injection by Compact Torus (CT…”
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Coherent manipulation of the internal state of ultracold 87Rb133Cs molecules with multiple microwave fields by Blackmore, Jacob A, Gregory, Philip D, Bromley, Sarah L, Cornish, Simon L

“…We explore coherent multi-photon processes in 87Rb133Cs molecules using 3-level lambda and ladder configurations of rotational and hyperfine states, and discuss their relevance to future applications…”
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PyLAT: Python LAMMPS Analysis Tools by Humbert, Michael T, Zhang, Yong, Maginn, Edward J

“… Here we describe a suite of open-source Python-based postprocessing routines we have developed called PyLAT…”
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GSEApy: a comprehensive package for performing gene set enrichment analysis in Python by Fang, Zhuoqing, Liu, Xinyuan, Peltz, Gary

“…Abstract Motivation Gene set enrichment analysis (GSEA) is a commonly used algorithm for characterizing gene expression changes…”
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MechElastic: A Python library for analysis of mechanical and elastic properties of bulk and 2D materials by Singh, Sobhit, Lang, Logan, Dovale-Farelo, Viviana, Herath, Uthpala, Tavadze, Pedram, Coudert, François-Xavier, Romero, Aldo H.

“…The MechElastic Python package evaluates the mechanical and elastic properties of bulk and 2D materials using the elastic coefficient matrix (Cij…”
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xMEN: a modular toolkit for cross-lingual medical entity normalization by Borchert, Florian, Llorca, Ignacio, Roller, Roland, Arnrich, Bert, Schapranow, Matthieu-P

“…Objective To improve performance of medical entity normalization across many languages, especially when fewer language resources are available compared to…”
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AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis by Isamura, Bienfait K., Lobb, Kevin A.

“…Predicting transition state geometries is one of the most challenging tasks in computational chemistry, which often requires expert-based knowledge and permanent human intervention…”
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VULCAN: An Open-source, Validated Chemical Kinetics Python Code for Exoplanetary Atmospheres by Tsai, Shang-Min, Lyons, James R., Grosheintz, Luc, Rimmer, Paul B., Kitzmann, Daniel, Heng, Kevin

“…We present an open-source and validated chemical kinetics code for studying hot exoplanetary atmospheres, which we name VULCAN…”
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Pyteomics—a Python Framework for Exploratory Data Analysis and Rapid Software Prototyping in Proteomics by Goloborodko, Anton A., Levitsky, Lev I., Ivanov, Mark V., Gorshkov, Mikhail V.

“…Pyteomics is a cross-platform, open-source Python library providing a rich set of tools for MS-based proteomics…”
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