Search Results - "open source python package"

MaD GUI: An Open-Source Python Package for Annotation and Analysis of Time-Series Data by Ollenschläger, Malte, Küderle, Arne, Mehringer, Wolfgang, Seifer, Ann-Kristin, Winkler, Jürgen, Gaßner, Heiko, Kluge, Felix, Eskofier, Bjoern M.

“… Therefore, we developed a generic open-source Python package focusing on adaptability, usability, and user experience…”
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minimod: An Open Source Python Package to Evaluate the Cost Effectiveness of Micronutrient Intervention Programs by Michuda, Aleksandr, Ortiz-Becerra, Karen, Adams, Katherine, Jarvis, Michael, Somda, Hervé, Arnold, Charles, Engle-Stone, Reina, Vosti, Stephen

“… minimod is an open-source python package that uses mixed…”
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Robust Automated Truncation Point Selection for Molecular Simulations by Clark, Finlay, Cole, Daniel J, Michel, Julien

“…Quantities calculated from molecular simulations are often subject to an initial bias due to unrepresentative starting configurations…”
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Semi-automated Anatomical Labeling and Inter-subject Warping of High-Density Intracranial Recording Electrodes in Electrocorticography by Hamilton, Liberty S., Chang, David L., Lee, Morgan B., Chang, Edward F.

“…In this article, we introduce img_pipe, our open source python package for preprocessing of imaging data for use in intracranial electrocorticography (ECoG…”
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exoALMA. IX. Regularized Maximum Likelihood Imaging of Non-Keplerian Features by Zawadzki, Brianna, Czekala, Ian, Galloway-Sprietsma, Maria, Bae, Jaehan, Barraza-Alfaro, Marcelo, Benisty, Myriam, Cataldi, Gianni, Curone, Pietro, Facchini, Stefano, Fasano, Daniele, Flock, Mario, Fukagawa, Misato, Garg, Himanshi, Hall, Cassandra, Hilder, Thomas, Huang, Jane, Ilee, John D., Isella, Andrea, Izquierdo, Andrés F., Kanagawa, Kazuhiro, Lesur, Geoffroy, Longarini, Cristiano, Loomis, Ryan A., Orihara, Ryuta, Pinte, Christophe, Price, Daniel J., Rosotti, Giovanni, Stadler, Jochen, Teague, Richard, Yen, Hsi-Wei, Wafflard-Fernandez, Gaylor, Wilner, David J., Winter, Andrew J., Wölfer, Lisa, Yoshida, Tomohiro C.

“…The planet-hunting Atacama Large Millimeter/submillimeter Array (ALMA) large program exoALMA observed 15 protoplanetary disks at ∼ 0 . ″ 15 angular resolution…”
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MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota by Diener, Christian, Gibbons, Sean M., Resendis-Antonio, Osbaldo

“…The bacterial communities that live within the human gut have been linked to health and disease. However, we are still just beginning to understand how those…”
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Does size matter? The relationship between predictive power of single-subject morphometric networks to spatial scale and edge weight by Raamana, Pradeep Reddy, Strother, Stephen C.

“… In this study, we present a histogram-based approach to construct subject-wise weighted networks that enable a principled comparison across different methods of network analysis…”
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An open-source human-in-the-loop BCI research framework: method and design by Gemborn Nilsson, Martin, Tufvesson, Pex, Heskebeck, Frida, Johansson, Mikael

“…Brain-computer interfaces (BCIs) translate brain activity into digital commands for interaction with the physical world. The technology has great potential in…”
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PEPbench—Open, Reproducible, and Systematic Benchmarking of Automated Pre‐Ejection Period Extraction Algorithms by Richer, Robert, Jorkowitz, Julia, Stühler, Sebastian, Abel, Luca, Kurz, Miriam, Oesten, Marie, Griesshammer, Stefan G., Albrecht, Nils C., Küderle, Arne, Ostgathe, Christoph, Kölpin, Alexander, Steigleder, Tobias, Rohleder, Nicolas, Eskofier, Bjoern M.

“…‐subject comparisons under similar hemodynamic conditions. While many algorithms for automated PEP extraction from electrocardiography (ECG…”
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EasyFlyTracker: A Simple Video Tracking Python Package for Analyzing Adult Drosophila Locomotor and Sleep Activity to Facilitate Revealing the Effect of Psychiatric Drugs by Qu, Susu, Zhu, Qingjie, Zhou, Han, Gao, Yuan, Wei, Yi, Ma, Yuan, Wang, Zhicheng, Sun, Xueting, Zhang, Lei, Yang, Quanjun, Kong, Lei, Zhang, Li

“… in pharmacogenetics and pharmacodynamics research due to difficulties in recruiting human subjects because of possibility of substance…”
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Pyrcca: Regularized Kernel Canonical Correlation Analysis in Python and Its Applications to Neuroimaging by Bilenko, Natalia Y., Gallant, Jack L.

“…In this article we introduce Pyrcca, an open-source Python package for performing canonical correlation analysis (CCA…”
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Modeling Intermittent Water Supply in SWMM: A Critical Review With Reproducible Recommendations and a Python Package by Abdelazeem, Omar, Meyer, David D. J.

“…Distinctly, Intermittent Water Supply networks cycle between filling, pressurized supply and draining, leading users to withdraw water and store it for later…”
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pynamicalsys: A Python toolkit for the analysis of dynamical systems by Sales, Matheus Rolim, de Souza, Leonardo Costa, Borin, Daniel, Mugnaine, Michele, Szezech, José Danilo, Viana, Ricardo Luiz, Caldas, Iberê Luiz, Leonel, Edson Denis, Antonopoulos, Chris G.

“…Since Lorenz’s seminal work on a simplified weather model, the numerical analysis of nonlinear dynamical systems has become one of the main subjects of research in physics…”
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Editorial: Emerging trends in large-scale data analysis for neuroscience research by Nathoo, Farouk S., Krigolson, Olave E., Wang, Fang

“…The primary aim of this research topic is to showcase recent progress in data-driven approaches for studying the brain. It focuses on tackling challenges in…”
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MICOM: Metagenome-Scale Modeling To Infer Metabolic Interactions in the Gut Microbiota by Christian Diener, Sean M. Gibbons, Osbaldo Resendis-Antonio

“…ABSTRACT Compositional changes in the gut microbiota have been associated with a variety of medical conditions such as obesity, Crohn’s disease, and diabetes…”
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PySDM v1: particle-based cloud modelling package for warm-rain microphysics and aqueous chemistry by Bartman, Piotr, Bulenok, Oleksii, Górski, Kamil, Jaruga, Anna, Łazarski, Grzegorz, Olesik, Michael, Piasecki, Bartosz, Singer, Clare E, Talar, Aleksandra, Arabas, Sylwester

“…PySDM is an open-source Python package for simulating the dynamics of particles undergoing condensational and collisional growth, interacting with a fluid flow and subject to chemical composition changes…”
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Minimum-Distortion Embedding by Agrawal, Akshay Kumar

“…We consider the vector embedding problem. We are given a finite set of items, with the goal of assigning a representative vector to each one, possibly under…”
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Does size matter? The relationship between predictive power of single-subject morphometric networks to spatial scale and edge weight by Raamana, Pradeep Reddy, Strother, Stephen C.

“… In this study, we present a histogram-based approach to construct subject-wise weighted networks that enable a principled comparison across different methods of network analysis…”
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Scalable Manifold Learning and Related Topics by McQueen, James

“…The subject of manifold learning is vast and still largely unexplored. As a subset of unsupervised learning it has a fundamental challenge in adequately…”
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Predictive power of single-subject morphometric networks is insensitive to spatial scale and edge weight by Pradeep Reddy Raamana, Strother, Stephen C

“… In this study, we present a histogram-based approach to construct subject-wise weighted networks that enable a principled comparison across different methods of network analysis…”
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