Suchergebnisse - "delay stochastic simulation algorithm"

Applications of the Delay Stochastic Simulation Algorithm (DSSA) in Mathematical Epidemiology von Bai, Fan

“… ) epidemic models also hold for the stochastic epidemic models with fixed delays. All theoretical results are verified by numerical simulations implemented by the delay stochastic simulation algorithm (DSSA) in Python …”
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Delay chemical master equation: direct and closed-form solutions von Leier, Andre, Marquez-Lago, Tatiana T

“… The stochastic simulation algorithm (SSA) describes the time evolution of a discrete nonlinear Markov process. This stochastic process has a probability …”
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Multi-scale approach for simulating time-delay biochemical reaction systems von Niu, Yuanling, Burrage, Kevin, Zhang, Chengjian

“… This multi-scale approach is shown to be much more efficient than existing methods such as the delay stochastic simulation algorithm and the modified next reaction method …”
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Accelerated stochastic simulation algorithm for coupled chemical reactions with delays von Zhou, Wen, Peng, Xinjun, Yan, Zhenglou, Wang, Yifei

“… Some biochemical processes do not occur instantaneously but have considerably delays associated with them. In the existed methods which solve these chemically …”
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Reduction of chemical reaction networks through delay distributions von Barrio, Manuel, Leier, André, Marquez-Lago, Tatiana T

“… The abridgement is achieved by generation of model-specific delay distribution functions, consecutively fed to a delay stochastic simulation algorithm …”
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DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia von Fu, Xiaoming, Zhou, Xinyi, Gu, Dongyang, Cao, Zhixing, Grima, Ramon

“… The package implements a variety of exact formulations of the delay stochastic simulation algorithm …”
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Generalized binomial tau-leap method for biochemical kinetics incorporating both delay and intrinsic noise von Leier, André, Marquez-Lago, Tatiana T, Burrage, Kevin

“… The delay stochastic simulation algorithm (DSSA) by Barrio et al. [Plos Comput. Biol. 2, 117(E) (2006)] was developed to simulate delayed processes in cell …”
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Interplay of cellular states: Role of delay as control mechanism von Singh, Shakti Nath, Chanu, Athokpam Langlen, Malik, Md. Zubbair, Singh, R.K. Brojen

“… Delay is ubiquitous, no matter how small or big it is. Experimental evidences show the existence and importance of time delayed reactions specially in …”
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Stochastic delay differential equations for genetic regulatory networks von Tian, Tianhai, Burrage, Kevin, Burrage, Pamela M., Carletti, Margherita

“… Based on recent developments with the delay stochastic simulation algorithm, the delay chemical master equation and the delay reaction rate equation are developed for describing biological reactions …”
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A Practicable Method of Tuning the Noise Intensity at Protein Level von Lo, Shih-Chiang, You, Chao-Xuan, Shu, Che-Chi

“… The expression of genes is inevitably subject to intracellular noise. Noise, for some regulatory networks, is constructive but detrimental to many others. The …”
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Improved delay-leaping simulation algorithm for biochemical reaction systems with delays von Yi, Na, Zhuang, Gang, Da, Liang, Wang, Yifei

“… An improved accelerated delay stochastic simulation algorithm for biochemical reaction systems with delays, termed the improved delay-leaping algorithm, is proposed in this paper …”
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Probability distributed time delays: integrating spatial effects into temporal models von Marquez-Lago, Tatiana T, Leier, André, Burrage, Kevin

“… Background In order to provide insights into the complex biochemical processes inside a cell, modelling approaches must find a balance between achieving an …”
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A partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delays von Ramaswamy, Rajesh, Sbalzarini, Ivo F

“… The non-Markovian kinetics of such reaction networks can be exactly simulated using the delay stochastic simulation algorithm (dSSA …”
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Transcriptional processes: Models and inference von Shetty, Keerthi S, B, Annappa

“… Many biochemical events involve multistep reactions. One of the most important biological processes that involve multistep reaction is the transcriptional …”
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Bio-PEPAd: A non-Markovian extension of Bio-PEPA von Caravagna, Giulio, Hillston, Jane

“… Delays in biological systems may be used to model events for which the underlying dynamics cannot be precisely observed, or to provide abstraction of some …”
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The distributed delay rearranges the bimodal distribution at protein level von Chiu, Lin-Jie, Ling, Ming-Yang, Wu, En-Hsuan, You, Chao-Xuan, Lin, Ssu-Ting, Shu, Che-Chi

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Oscillatory Regulation of Hes1: Discrete Stochastic Delay Modelling and Simulation von Barrio, Manuel, Burrage, Kevin, Leier, André, Tian, Tianhai

“… Discrete stochastic simulations are a powerful tool for understanding the dynamics of chemical kinetics when there are small-to-moderate numbers of certain …”
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Parallel Stochastic Simulation of Biochemical Reaction Systems von Cook, Keisha

“… Chemical reactions of various scales occur in nature and in our bodies. As technology has improved, researchers have gained access to in-depth knowledge about …”
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DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia von Fu, Xiaoming, Zhou, Xinyi, Gu, Dongyang, Cao, Zhixing, Grima, Ramon

“… The package implements a variety of exact formulations of the delay stochastic simulation algorithm …”
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Interplay of cellular states: Role of delay as control mechanism von Singh, Shakti Nath, Chanu, Athokpam Langlen, Malik, Md Zubbair, Brojen Singh, R K

“… Delay is everywhere, no matter how small or big it is. Experimental evidences show the existence and importance of time delayed reactions specially in …”
Volltext