Search Results - "bioinformatics workflows"

Bioinformatics Workflows With NoSQL Database in Cloud Computing by Wercelens, Polyane, da Silva, Waldeyr, Hondo, Fernanda, Castro, Klayton, Walter, Maria Emília, Araújo, Aletéia, Lifschitz, Sergio, Holanda, Maristela

“… Due to the nature of the raw data and the in silico environment of Molecular Biology experiments, apart from the research subject, 2 practical and closely related problems have been studied…”
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Microbiomes in supragingival biofilms and saliva of adolescents with gingivitis and gingival health by Wirth, Roland, Maróti, Gergely, Lipták, Lídia, Mester, Mónika, Al Ayoubi, Alaa, Pap, Bernadett, Madléna, Melinda, Minárovits, János, Kovács, Kornél L.

“… These and the relationships to dental health are not fully understood yet. Subjects and Methods Supragingival biofilm samples (n = 36…”
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Identification of Disease-Associated MicroRNAs by Zhu, Hongmei

“…, and to discover the subgroups of disease, but findings from these studies are usually inconsistent, not robust, unrepeatable and lack of statistical power which are subject to evaluation by meta-analysis…”
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Bioinformatics Studies on Transcriptome and Methylome of Common Asian Cancers by Yu, Hung On Ken

“…With the costs of generating next-generation sequencing (NGS) data continuing to drop, it is possible to perform -omics studies on various human cancers in an…”
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Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions by Schneider, Thomas, Keiblinger, Katharina M, Schmid, Emanuel, Sterflinger-Gleixner, Katja, Ellersdorfer, Günther, Roschitzki, Bernd, Richter, Andreas, Eberl, Leo, Zechmeister-Boltenstern, Sophie, Riedel, Kathrin

“…Leaf-litter decomposition is a central process in carbon cycling; however, our knowledge about the microbial regulation of this process is still scarce…”
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No metagenomic evidence of tumorigenic viruses in cancers from a selected cohort of immunosuppressed subjects by Passaro, Nunzia, Casagrande, Andrea, Chiara, Matteo, Fosso, Bruno, Manzari, Caterina, D’Erchia, Anna Maria, Iesari, Samuele, Pisani, Francesco, Famulari, Antonio, Tulissi, Patrizia, Mastrosimone, Stefania, Maresca, Maria Cristina, Mercante, Giuseppe, Spriano, Giuseppe, Corrado, Giacomo, Vizza, Enrico, Garbuglia, Anna Rosa, Capobianchi, Maria Rosaria, Mottini, Carla, Cenci, Alessandra, Tartaglia, Marco, Costa, Alessandro Nanni, Pesole, Graziano, Crescenzi, Marco

“… Here, we apply a rigorous bioinformatics workflow to investigate in depth tumor metagenomes from a small but carefully selected cohort of immunosuppressed patients…”
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Profiling of Histone Post-Translational Modifications in Mouse Brain with High-Resolution Top-Down Mass Spectrometry by Zhou, Mowei, Paša-Tolić, Ljiljana, Stenoien, David L

“… Here we used state-of-the-art mass spectrometry and a bioinformatics workflow for targeted data analysis and visualization…”
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In Silico Evaluation of Putative S100B Interacting Proteins in Healthy and IBD Gut Microbiota by Orsini, Massimiliano, Di Liddo, Rosa, Valeriani, Federica, Mancin, Marzia, D’Incà, Renata, Castagnetti, Andrea, Aceti, Antonio, Parnigotto, Pier Paolo, Romano Spica, Vincenzo, Michetti, Fabrizio

“… proteome, we developed a bioinformatics workflow by integrating the interaction features of known…”
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Mining NCBI Sequence Read Archive Database: An Untapped Source of Organelle Genomes for Taxonomic and Comparative Genomics Research by Eldem, Vahap, Balcı, Mehmet Ali

“… Here, we developed an automated bioinformatics workflow called “OrgaMiner”, designed to unveil high-quality mitochondrial and chloroplast genomes by data mining the NCBI SRA database…”
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Phosphoproteomics Enables Molecular Subtyping and Nomination of Kinase Candidates for Individual Patients of Diffuse-Type Gastric Cancer by Tong, Mengsha, Yu, Chunyu, Shi, Jinwen, Huang, Wenwen, Ge, Sai, Liu, Mingwei, Song, Lei, Zhan, Dongdong, Xia, Xia, Liu, Wanlin, Feng, Jinwen, Shi, Wenhao, Ji, Jiafu, Gao, Jing, Shi, Tieliu, Zhu, Weimin, Ding, Chen, Wang, Yi, He, Fuchu, Shen, Lin, Li, Tingting, Qin, Jun

“…The diffuse-type gastric cancer (DGC) constitutes a subgroup of gastric cancer with poor prognosis and no effective molecular therapies. Here, we report a…”
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Sex-divergent effects on the NAD+-dependent deacetylase sirtuin signaling across the olfactory–entorhinal–amygdaloid axis in Alzheimer’s and Parkinson’s diseases by Cartas-Cejudo, Paz, Lachén-Montes, Mercedes, Ferrer, Isidro, Fernández-Irigoyen, Joaquín, Santamaría, Enrique

“… (sequential window acquisition of all theoretical fragment ion spectra mass spectrometry) and bioinformatic workflows were applied in 57 post-mortem olfactory tracts (OT…”
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Unraveling Potential Tauopathy Biomarkers in Cerebrospinal Fluid: Insights from Olfactory Tract Data by Lachén-Montes, Mercedes, Cartas-Cejudo, Paz, Anaya-Cubero, Elena, Cortés, Adriana, Fernández-Irigoyen, Joaquín, Santamaría, Enrique

“…Due to the increase in life expectancy, the prevalence of neurodegenerative diseases is estimated to grow considerably in the next decades. Unfortunately,…”
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Scalable nonparametric clustering with unified marker gene selection for single-cell RNA-seq data by Nwizu, Chibuikem, Hughes, Madeline, Ramseier, Michelle L, Navia, Andrew W, Shalek, Alex K, Fusi, Nicolo, Raghavan, Srivatsan, Winter, Peter S, Amini, Ava P, Crawford, Lorin

“… However, current methods face two main limitations. First, they require user-specified heuristics which add time and complexity to bioinformatic workflows…”
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Mass Spectrometry-Centered Multi-Omic Applications in the Analysis of Inflammation and Exposure by Rajczewski, Andrew Traver

“… of ‘omics technologies and data. Through supplemental bioinformatic workflows, putative identifications of non-canonical peptides or non-host peptides (e.g microbial…”
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DNA metabarcoding uncovers fungal diversity of mixed airborne samples in Italy by Banchi, Elisa, Ametrano, Claudio Gennaro, Stanković, David, Verardo, Pierluigi, Moretti, Olga, Gabrielli, Francesca, Lazzarin, Stefania, Borney, Maria Francesca, Tassan, Francesca, Tretiach, Mauro, Pallavicini, Alberto, Muggia, Lucia

“…Fungal spores and mycelium fragments are particles which become and remain airborne and have been subjects of aerobiological studies…”
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Quantitative proteomic profiling of extracellular matrix and site-specific collagen post-translational modifications in an in vitro model of lung fibrosis by Merl-Pham, Juliane, Basak, Trayambak, Knüppel, Larissa, Ramanujam, Deepak, Athanason, Mark, Behr, Jürgen, Engelhardt, Stefan, Eickelberg, Oliver, Hauck, Stefanie M., Vanacore, Roberto, Staab-Weijnitz, Claudia A.

“…Lung fibrosis is characterized by excessive deposition of extracellular matrix (ECM), in particular collagens, by fibroblasts in the interstitium. Transforming…”
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A Metagenomic Approach to the Airways Microbiome of Chronic Obstructive Pulmonary Disease (COPD) by Fernandez, M., Jaric, M., Schneper, L., Segal, J., Silva-Herzog, E., Campos, M., Fishman, J., Salathe, M., Wanner, A., Infante, J., Mathee, K., Narasimhan, G.

“…Current research has shown that different sites of the human body house different bacterial communities. There is a strong correlation between an individual's…”
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