Výsledky vyhľadávania - "bioinformatics workflow"

Snakemake—a scalable bioinformatics workflow engine Autor Köster, Johannes, Rahmann, Sven

“…Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from…”
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Snakemake—a scalable bioinformatics workflow engine Autor Köster, Johannes, Rahmann, Sven

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Guide to Metabolomics Analysis: A Bioinformatics Workflow Autor Chen, Yang, Li, En-Min, Xu, Li-Yan

“…Metabolomics is an emerging field that quantifies numerous metabolites systematically. The key purpose of metabolomics is to identify the metabolites…”
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Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers Autor Wratten, Laura, Wilm, Andreas, Göke, Jonathan

“… commonly used approaches for bioinformatics workflows, and provide…”
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MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data Autor Bosilj, Martin, Suljič, Alen, Zakotnik, Samo, Slunečko, Jan, Kogoj, Rok, Korva, Misa

“…Abstract Over the past decade, there have been many improvements in the field of metagenomics, including sequencing technologies, advances in bioinformatics…”
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Using prototyping to choose a bioinformatics workflow management system Autor Jackson, Michael, Kavoussanakis, Kostas, Wallace, Edward W. J.

“…Workflow management systems represent, manage, and execute multistep computational analyses and offer many benefits to bioinformaticians. They provide a common…”
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Discovery of C-Glycosylpyranonaphthoquinones in Streptomyces sp. MBT76 by a Combined NMR-Based Metabolomics and Bioinformatics Workflow Autor Wu, Changsheng, Du, Chao, Ichinose, Koji, Choi, Young Hae, van Wezel, Gilles P

“…Mining of microbial genomes has revealed that actinomycetes harbor far more biosynthetic potential for bioactive natural products than anticipated. Activation…”
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SweetNET: A Bioinformatics Workflow for Glycopeptide MS/MS Spectral Analysis Autor Nasir, Waqas, Toledo, Alejandro Gomez, Noborn, Fredrik, Nilsson, Jonas, Wang, Mingxun, Bandeira, Nuno, Larson, Göran

“… Here we present SweetNET: a data-oriented bioinformatics workflow for efficient analysis of hundreds of thousands of glycopeptide MS/MS-spectra…”
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PathoSeq-QC: a decision support bioinformatics workflow for robust genomic surveillance Autor Leoni, Gabriele, Petrillo, Mauro, Ruiz-Serra, Victoria, Querci, Maddalena, Coecke, Sandra, Wiesenthal, Tobias

“…Recommendations on the use of genomics for pathogens surveillance are evidence that high-throughput genomic sequencing plays a key role to fight global health…”
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Systematic elucidation of neuron-astrocyte interaction in models of amyotrophic lateral sclerosis using multi-modal integrated bioinformatics workflow Autor Mishra, Vartika, Re, Diane B., Le Verche, Virginia, Alvarez, Mariano J., Vasciaveo, Alessandro, Jacquier, Arnaud, Doulias, Paschalis-Tomas, Greco, Todd M., Nizzardo, Monica, Papadimitriou, Dimitra, Nagata, Tetsuya, Rinchetti, Paola, Perez-Torres, Eduardo J., Politi, Kristin A., Ikiz, Burcin, Clare, Kevin, Than, Manuel E., Corti, Stefania, Ischiropoulos, Harry, Lotti, Francesco, Califano, Andrea, Przedborski, Serge

“…Cell-to-cell communications are critical determinants of pathophysiological phenotypes, but methodologies for their systematic elucidation are lacking. Herein,…”
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Merging and concatenation of sequencing reads: a bioinformatics workflow for the comprehensive profiling of microbiome from amplicon data Autor Ramakodi, Meganathan P

“…Abstract A comprehensive profiling of microbial diversity is essential to understand the ecosystem functions. Universal primer sets such as the 515Y/926R could…”
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Protein–Protein Interaction (PPI) Network of Zebrafish Oestrogen Receptors: A Bioinformatics Workflow Autor Zainal-Abidin, Rabiatul-Adawiah, Afiqah-Aleng, Nor, Abdullah-Zawawi, Muhammad-Redha, Harun, Sarahani, Mohamed-Hussein, Zeti-Azura

“…Protein–protein interaction (PPI) is involved in every biological process that occurs within an organism. The understanding of PPI is essential for deciphering…”
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CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis Autor Qiu, Xintao, Feit, Avery S., Feiglin, Ariel, Xie, Yingtian, Kesten, Nikolas, Taing, Len, Perkins, Joseph, Gu, Shengqing, Li, Yihao, Cejas, Paloma, Zhou, Ningxuan, Jeselsohn, Rinath, Brown, Myles, Shirley Liu, X., Long, Henry W.

“… Here we present Containerized Bioinformatics workflow for Reproducible ChIP/ATAC-seq Analysis (CoBRA…”
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A next generation sequencing approach with a suitable bioinformatics workflow to study fungal diversity in bioaerosols released from two different types of composting plants Autor Mbareche, Hamza, Veillette, Marc, Bonifait, Laetitia, Dubuis, Marie-Eve, Benard, Yves, Marchand, Geneviève, Bilodeau, Guillaume J., Duchaine, Caroline

“…Composting is used all over the world to transform different types of organic matter through the actions of complex microbial communities. Moving and handling…”
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Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow Autor Deshmukh, Atul S, Cox, Juergen, Jensen, Lars Juhl, Meissner, Felix, Mann, Matthias

“…Skeletal muscle has emerged as an important secretory organ that produces so-called myokines, regulating energy metabolism via autocrine, paracrine, and…”
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Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists Autor Naranpanawa, D. N. U., Chandrasekara, C. H. W. M. R. B., Bandaranayake, P. C. G., Bandaranayake, A. U.

“…Recent advances in next-generation sequencing technologies have paved the path for a considerable amount of sequencing data at a relatively low cost. This has…”
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CMK: Enhancing Resource Usage Monitoring across Diverse Bioinformatics Workflow Management Systems Autor Nica, Robert, Götz, Stefan, Moltó, Germán

“… Efficient resource utilization in these systems is crucial for keeping costs low and improving processing times, especially for large-scale bioinformatics workflows running in cloud environments…”
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A Systematic Bioinformatics Workflow With Meta-Analytics Identified Potential Pathogenic Factors of Alzheimer’s Disease Autor Yuen, Sze Chung, Zhu, Hongmei, Leung, Siu-wai

“…Potential pathogenic factors, other than well-known , , and , can be further identified from transcriptomics studies of differentially expressed genes (DEGs)…”
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A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data Autor Atxaerandio-Landa, Aitor, Arrieta-Gisasola, Ainhoa, Laorden, Lorena, Bikandi, Joseba, Garaizar, Javier, Martinez-Malaxetxebarria, Irati, Martinez-Ballesteros, Ilargi

“… In this work, a bioinformatics workflow for (Illumina) WGS data is presented for bacterial characterisation including genome annotation, species identification, serotype…”
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Closha: bioinformatics workflow system for the analysis of massive sequencing data Autor Ko, GunHwan, Kim, Pan-Gyu, Yoon, Jongcheol, Han, Gukhee, Park, Seong-Jin, Song, Wangho, Lee, Byungwook

“…Background While next-generation sequencing (NGS) costs have fallen in recent years, the cost and complexity of computation remain substantial obstacles to the…”
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