Search Results - "Viruses - classification"

Suppressors of RNAi from plant viruses are subject to episodic positive selection by Murray, Gemma G R, Kosakovsky Pond, Sergei L, Obbard, Darren J

“…Viral suppressors of RNAi (VSRs) are proteins that actively inhibit the antiviral RNA interference (RNAi) immune response, providing an immune evasion route…”
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Longitudinal analysis of the enteric virome in paediatric subjects from the Free State Province, South Africa, reveals early gut colonisation and temporal dynamics by Mogotsi, Milton Tshidiso, Ogunbayo, Ayodeji Emmanuel, Bester, Phillip Armand, O'Neill, Hester Gertruida, Nyaga, Martin Munene

“…•Gut microbial colonisation in infants is a crucial, yet intricate, process, characterised by minimal diversity at birth that increases with age.•The infant…”
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Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease by Clooney, Adam G, Sutton, Thomas D S, Shkoporov, Andrey N, Holohan, Ross K, Daly, Karen M, O'Regan, Orla, Ryan, Feargal J, Draper, Lorraine A, Plevy, Scott E, Ross, R Paul, Hill, Colin

“… Unlike prior database-dependent methods, no changes in viral richness were observed. Among IBD subjects, the changes in virome composition reflected alterations in bacterial composition…”
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Altered Oral Viral Ecology in Association with Periodontal Disease by Ly, Melissa, Abeles, Shira R., Boehm, Tobias K., Robles-Sikisaka, Refugio, Naidu, Mayuri, Santiago-Rodriguez, Tasha, Pride, David T.

“… communities that reflect their oral health status. We found communities of viruses inhabiting saliva and the subgingival and supragingival biofilms of each subject that were composed largely of bacteriophage…”
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Altered Virome and Bacterial Microbiome in Human Immunodeficiency Virus-Associated Acquired Immunodeficiency Syndrome by Monaco, Cynthia L, Gootenberg, David B, Zhao, Guoyan, Handley, Scott A, Ghebremichael, Musie S, Lim, Efrem S, Lankowski, Alex, Baldridge, Megan T, Wilen, Craig B, Flagg, Meaghan, Norman, Jason M, Keller, Brian C, Luévano, Jesús Mario, Wang, David, Boum, Yap, Martin, Jeffrey N, Hunt, Peter W, Bangsberg, David R, Siedner, Mark J, Kwon, Douglas S, Virgin, Herbert W

“… We characterized the enteric virome and bacterial microbiome in a cohort of Ugandan patients, including HIV-uninfected or HIV-infected subjects and those either treated with anti-retroviral therapy (ART) or untreated…”
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A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq by Logan, Grace, Freimanis, Graham L, King, David J, Valdazo-González, Begoña, Bachanek-Bankowska, Katarzyna, Sanderson, Nicholas D, Knowles, Nick J, King, Donald P, Cottam, Eleanor M

“…) in diagnostic settings for a variety of human and veterinary pathogens. Previous sequencing protocols have been subject to biases such as those encountered during PCR…”
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Redondoviridae, a Family of Small, Circular DNA Viruses of the Human Oro-Respiratory Tract Associated with Periodontitis and Critical Illness by Abbas, Arwa A, Taylor, Louis J, Dothard, Marisol I, Leiby, Jacob S, Fitzgerald, Ayannah S, Khatib, Layla A, Collman, Ronald G, Bushman, Frederic D

“…The global virome is largely uncharacterized but is now being unveiled by metagenomic DNA sequencing. Exploring the human respiratory virome, in particular,…”
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The fecal virome of pigs on a high-density farm by Shan, Tongling, Li, Linlin, Simmonds, Peter, Wang, Chunlin, Moeser, Adam, Delwart, Eric

“…Swine are an important source of proteins worldwide but are subject to frequent viral outbreaks and numerous infections capable of infecting humans…”
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Metagenomic analysis of double-stranded DNA viruses in healthy adults by Wylie, Kristine M, Mihindukulasuriya, Kathie A, Zhou, Yanjiao, Sodergren, Erica, Storch, Gregory A, Weinstock, George M

“… We studied 706 samples from 102 subjects were studied, with each subject sampled at up to five major body habitats…”
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Enhanced Virus Detection and Metagenomic Sequencing in Patients with Meningitis and Encephalitis by Piantadosi, Anne, Mukerji, Shibani S., Ye, Simon, Leone, Michael J., Freimark, Lisa M., Park, Daniel, Adams, Gordon, Lemieux, Jacob, Kanjilal, Sanjat, Solomon, Isaac H., Ahmed, Asim A., Goldstein, Robert, Ganesh, Vijay, Ostrem, Bridget, Cummins, Kaelyn C., Thon, Jesse M., Kinsella, Cormac M., Rosenberg, Eric, Frosch, Matthew P., Goldberg, Marcia B., Cho, Tracey A., Sabeti, Pardis

“…Meningitis and encephalitis are leading global causes of central nervous system (CNS) disability and mortality. Current diagnostic workflows remain…”
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The Human Virome: Viral Metagenomics, Relations with Human Diseases, and Therapeutic Applications by Bai, Geng-Hao, Lin, Sheng-Chieh, Hsu, Yi-Hsiang, Chen, Shih-Yen

“…The human body is colonized by a wide range of microorganisms. The field of viromics has expanded since the first reports on the detection of viruses via…”
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Exhalation of respiratory viruses by breathing, coughing, and talking by Stelzer-Braid, Sacha, Oliver, Brian G, Blazey, Angus J, Argent, Elizabeth, Newsome, Timothy P, Rawlinson, William D, Tovey, Euan R

“…There is a lack of quantitative information about the generation of virus aerosols by infected subjects…”
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The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome by Hannigan, Geoffrey D., Meisel, Jacquelyn S., Tyldsley, Amanda S., Zheng, Qi, Hodkinson, Brendan P., SanMiguel, Adam J., Minot, Samuel, Bushman, Frederic D., Grice, Elizabeth A.

“…Viruses make up a major component of the human microbiota but are poorly understood in the skin, our primary barrier to the external environment. Viral…”
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Viral diversity and dynamics in an infant gut by Breitbart, Mya, Haynes, Matthew, Kelley, Scott, Angly, Florent, Edwards, Robert A., Felts, Ben, Mahaffy, Joseph M., Mueller, Jennifer, Nulton, James, Rayhawk, Steve, Rodriguez-Brito, Beltran, Salamon, Peter, Rohwer, Forest

“…Metagenomic sequencing of DNA viruses from the feces of a healthy week-old infant revealed a viral community with extremely low diversity. The identifiable…”
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Skin dysbiosis in the microbiome in atopic dermatitis is site-specific and involves bacteria, fungus and virus by Bjerre, Rie Dybboe, Holm, Jacob Bak, Palleja, Albert, Sølberg, Julie, Skov, Lone, Johansen, Jeanne Duus

“…Background Microbial dysbiosis with increased Staphylococcus aureus ( S. aureus ) colonization on the skin is a hallmark of atopic dermatitis (AD), however…”
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Dynamics of the Stool Virome in Very Early-Onset Inflammatory Bowel Disease by Liang, Guanxiang, Conrad, Maire A, Kelsen, Judith R, Kessler, Lyanna R, Breton, Jessica, Albenberg, Lindsey G, Marakos, Sarah, Galgano, Alissa, Devas, Nina, Erlichman, Jessi, Zhang, Huanjia, Mattei, Lisa, Bittinger, Kyle, Baldassano, Robert N, Bushman, Frederic D

“… more robustly in younger subjects, and so be more detectable. Virus-like particles [VLPs] were purified from stool samples collected from patients with VEO-IBD [n = 54…”
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A tissue level atlas of the healthy human virome by Kumata, Ryuichi, Ito, Jumpei, Takahashi, Kenta, Suzuki, Tadaki, Sato, Kei

“…Background Human-resident microbes can influence both health and disease. Investigating the microbiome using next-generation sequencing technology has revealed…”
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Redondovirus Diversity and Evolution on Global, Individual, and Molecular Scales by Taylor, Louis J, Dothard, Marisol I, Rubel, Meagan A, Allen, Audrey A, Hwang, Young, Roche, Aoife M, Graham-Wooten, Jevon, Fitzgerald, Ayannah S, Khatib, Layla A, Ranciaro, Alessia, Thompson, Simon R, Beggs, William R, Campbell, Michael C, Mokone, Gaonyadiwe G, Mpoloka, Sununguko Wata, Fokunang, Charles, Njamnshi, Alfred K, Mbunwe, Eric, Woldemeskel, Dawit, Belay, Gurja, Nyambo, Thomas, Tishkoff, Sarah A, Collman, Ronald G, Bushman, Frederic D

“… Redondoviruses were previously found in ∼15% of respiratory specimens from U.S. urban subjects; levels were elevated in individuals with periodontitis or critical illness…”
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Viral acute respiratory infections in neonatal intensive care healthcare workers: a nine-month point-prevalence cohort study by Luoto, R., Aavasalo, E., Waris, M., Lehtonen, L., Peltola, V., Ruuskanen, O.

“… Additionally, in the case of ARI symptoms, a nasal swab was self-collected by the study subjects…”
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Multikingdom characterization of gut microbiota in patients with rheumatoid arthritis and rheumatoid arthritis‐associated interstitial lung disease by Xing, Yida, Liu, Yiping, Sha, Shanshan, Zhang, Yue, Dou, Yuemeng, Liu, Changyan, Xu, Mingxi, Zhao, Lin, Wang, Jingdan, Wang, Yan, Ma, Xiaochi, Yan, Qiulong, Kong, Xiaodan

“…Rheumatoid arthritis‐associated interstitial lung disease (RA‐ILD) is a serious and common extra‐articular disease manifestation. Patients with RA‐ILD…”
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