Search Results - "Viruses/classification"

ICTV Virus Taxonomy Profile: Botourmiaviridae by Ayllón, María A, Turina, Massimo, Xie, Jiatao, Nerva, Luca, Marzano, Shin-Yi Lee, Donaire, Livia, Jiang, Daohong, Consortium, Ictv Report

“…The family includes viruses infecting plants and filamentous fungi containing a positive-sense, ssRNA genome that can be mono- or multi-segmented. Genera in…”
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ICTV Virus Taxonomy Profile: Botourmiaviridae 2024 by Donaire, Livia, Xie, Jiatao, Nerva, Luca, Jiang, Daohong, Marzano, Shin-Yi Lee, Sabanadzovic, Sead, Turina, Massimo, Ayllón, María A

“…The family includes viruses with a mono- or multi-segmented positive-sense RNA genome that infect plants and filamentous fungi. The family includes the genera…”
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Using Metagenomics to Characterize an Expanding Virosphere by Zhang, Yong-Zhen, Shi, Mang, Holmes, Edward C

“…We know less about viruses than any other lifeform. Fortunately, metagenomics has led to a massive expansion in the known diversity of the virosphere. Here, we…”
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Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks by Bin Jang, Ho, Bolduc, Benjamin, Zablocki, Olivier, Kuhn, Jens H, Roux, Simon, Adriaenssens, Evelien M, Brister, J Rodney, Kropinski, Andrew M, Krupovic, Mart, Lavigne, Rob, Turner, Dann, Sullivan, Matthew B

“…Microbiomes from every environment contain a myriad of uncultivated archaeal and bacterial viruses, but studying these viruses is hampered by the lack of a…”
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses by Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, Gazitúa, M. Consuelo, Vik, Dean, Sullivan, Matthew B., Roux, Simon

“…Background Viruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence…”
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Virome analysis for identification of novel mammalian viruses in bat species from Chinese provinces by Wu, Zhiqiang, Ren, Xianwen, Yang, Li, Hu, Yongfeng, Yang, Jian, He, Guimei, Zhang, Junpeng, Dong, Jie, Sun, Lilian, Du, Jiang, Liu, Liguo, Xue, Ying, Wang, Jianmin, Yang, Fan, Zhang, Shuyi, Jin, Qi

“…Bats are natural hosts for a large variety of zoonotic viruses. This study aimed to describe the range of bat viromes, including viruses from mammals, insects,…”
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Benchmarking of virome metagenomic analysis approaches using a large, 60+ members, viral synthetic community by Schönegger, Deborah, Moubset, Oumaima, Margaria, Paolo, Menzel, Wulf, Winter, Stephan, Roumagnac, Philippe, Marais, Armelle, Candresse, Thierry

“…We report here efforts to benchmark performance of two widespread approaches for virome analysis, which target either virion-associated nucleic acids (VANA) or…”
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Virus taxonomy and the role of the International Committee on Taxonomy of Viruses (ICTV) by Siddell, Stuart G, Smith, Donald B, Adriaenssens, Evelien, Alfenas-Zerbini, Poliane, Dutilh, Bas E, Garcia, Maria Laura, Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H, Lambert, Amy J, Lefkowitz, Elliot J, Łobocka, Małgorzata, Mushegian, Arcady R, Oksanen, Hanna M, Robertson, David L, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Suzuki, Nobuhiro, Van Doorslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, F Murilo

“…The taxonomy of viruses is developed and overseen by the International Committee on Taxonomy of Viruses (ICTV), which scrutinizes, approves and ratifies…”
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Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Dempsey, Donald M., Dutilh, Bas E., Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J.

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in February 2019. Of…”
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ICTV Virus Taxonomy Profile: Solemoviridae 2021 by Sõmera, Merike, Fargette, Denis, Hébrard, Eugénie, Sarmiento, Cecilia, Ictv Report Consortium

“…The family includes viruses with icosahedral particles (26-34 nm in diameter) assembled on =3 symmetry with a 4-6 kb positive-sense, monopartite, polycistronic…”
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Deformed wing virus is a recent global epidemic in honeybees driven by Varroa mites by Wilfert, L, Long, G, Leggett, H C, Schmid-Hempel, P, Butlin, R, Martin, S J M, Boots, M

“…Deformed wing virus (DWV) and its vector, the mite Varroa destructor, are a major threat to the world's honeybees. Although the impact of Varroa on…”
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Adnaviria : a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes by Krupovic, Mart, Kuhn, Jens H, Wang, Fengbin, Baquero, Diana P, Dolja, Valerian V, Egelman, Edward H, Prangishvili, David, Koonin, Eugene V

“…The International Committee on Taxonomy of Viruses (ICTV) has recently adopted a comprehensive, hierarchical system of virus taxa. The highest ranks in this…”
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Ambiviricota , a novel ribovirian phylum for viruses with viroid-like properties by Kuhn, Jens H, Botella, Leticia, de la Peña, Marcos, Vainio, Eeva J, Krupovic, Mart, Lee, Benjamin D, Navarro, Beatriz, Sabanadzovic, Sead, Simmonds, Peter, Turina, Massimo

“…Fungi harbor a vast diversity of mobile genetic elements (MGEs). Recently, novel fungal MGEs, tentatively referred to as 'ambiviruses,' were described…”
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Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee by Adriaenssens, Evelien M., Sullivan, Matthew B., Knezevic, Petar, van Zyl, Leonardo J., Sarkar, B. L., Dutilh, Bas E., Alfenas-Zerbini, Poliane, Łobocka, Małgorzata, Tong, Yigang, Brister, James Rodney, Moreno Switt, Andrea I., Klumpp, Jochen, Aziz, Ramy Karam, Barylski, Jakub, Uchiyama, Jumpei, Edwards, Rob A., Kropinski, Andrew M., Petty, Nicola K., Clokie, Martha R. J., Kushkina, Alla I., Morozova, Vera V., Duffy, Siobain, Gillis, Annika, Rumnieks, Janis, Kurtböke, İpek, Chanishvili, Nina, Goodridge, Lawrence, Wittmann, Johannes, Lavigne, Rob, Jang, Ho Bin, Prangishvili, David, Enault, Francois, Turner, Dann, Poranen, Minna M., Oksanen, Hanna M., Krupovic, Mart

“…This article is a summary of the activities of the ICTV’s Bacterial and Archaeal Viruses Subcommittee for the years 2018 and 2019. Highlights include the…”
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Complete genome sequence of a novel iflavirus from wheat sawfly (Dolerus tritici) by Guo, Jiashu, Liu, Wenwen, Chen, Chen, Xu, Zhongtian, Francis, Frederic, Wang, Xifeng

“…Little is known about the insect viruses in wheat sawfly, Dolerus tritici , which is an important agricultural insect feeding on wheat leaves. Here, we used…”
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Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021) by Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Davison, Andrew J., Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Nibert, Max L., Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Dooerslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2021. The entire…”
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Giant virus diversity and host interactions through global metagenomics by Schulz, Frederik, Roux, Simon, Paez-Espino, David, Jungbluth, Sean, Walsh, David A., Denef, Vincent J., McMahon, Katherine D., Konstantinidis, Konstantinos T., Eloe-Fadrosh, Emiley A., Kyrpides, Nikos C., Woyke, Tanja

“…Our current knowledge about nucleocytoplasmic large DNA viruses (NCLDVs) is largely derived from viral isolates that are co-cultivated with protists and algae…”
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Curcumin as an Antiviral Agent by Jennings, Morgan R., Parks, Robin J.

“…Curcumin, the primary curcuminoid compound found in turmeric spice, has shown broad activity as an antimicrobial agent, limiting the replication of many…”
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Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV) by Lefkowitz, Elliot J, Dempsey, Donald M, Hendrickson, Robert Curtis, Orton, Richard J, Siddell, Stuart G, Smith, Donald B

“…Abstract The International Committee on Taxonomy of Viruses (ICTV) is charged with the task of developing, refining, and maintaining a universal virus…”
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The family Rhabdoviridae: mono- and bipartite negative-sense RNA viruses with diverse genome organization and common evolutionary origins by Dietzgen, Ralf G., Kondo, Hideki, Goodin, Michael M., Kurath, Gael, Vasilakis, Nikos

“…[Display omitted] •Family Rhabdoviridae is comprised of thirteen genera.•Rhabdoviruses are mostly enveloped and infect ecologically diverse hosts.•Rhabdovirus…”
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