Výsledky vyhľadávania - "Varsani, Arvind"

VIRIDIC—A Novel Tool to Calculate the Intergenomic Similarities of Prokaryote-Infecting Viruses Autor Moraru, Cristina, Varsani, Arvind, Kropinski, Andrew M.

“…Nucleotide-based intergenomic similarities are useful to understand how viruses are related with each other and to classify them. Here we have developed…”
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Family Genomoviridae: 2021 taxonomy update Autor Varsani, Arvind, Krupovic, Mart

“…The family Genomoviridae (phylum Cressdnaviricota , class Repensiviricetes , order Geplafuvirales ) includes viruses with circular single-stranded DNA genomes…”
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SDT: a virus classification tool based on pairwise sequence alignment and identity calculation Autor Muhire, Brejnev Muhizi, Varsani, Arvind, Martin, Darren Patrick

“…The perpetually increasing rate at which viral full-genome sequences are being determined is creating a pressing demand for computational tools that will aid…”
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Smacoviridae: a new family of animal-associated single-stranded DNA viruses Autor Varsani, Arvind, Krupovic, Mart

“…Smacoviruses have small (∼2.3-2.9 kb), circular single-stranded DNA genomes encoding rolling circle replication-associated proteins (Rep) and unique capsid…”
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A 2021 taxonomy update for the family Smacoviridae Autor Krupovic, Mart, Varsani, Arvind

“…The family Smacoviridae (order Cremevirales , class Arfiviricetes , phylum Cressdnaviricota ) is comprised of viruses with small circular single-stranded DNA…”
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Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids Autor Kazlauskas, Darius, Varsani, Arvind, Koonin, Eugene V., Krupovic, Mart

“…Single-stranded (ss) DNA viruses are a major component of the earth virome. In particular, the circular, Rep-encoding ssDNA (CRESS-DNA) viruses show high…”
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ICTV Virus Taxonomy Profile: Circoviridae Autor Breitbart, Mya, Delwart, Eric, Rosario, Karyna, Segalés, Joaquim, Varsani, Arvind, Ictv Report Consortium

“…The family Circoviridae comprises viruses with small, circular, single-stranded DNA (ssDNA) genomes, including the smallest known animal viruses. Members of…”
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Global Organization and Proposed Megataxonomy of the Virus World Autor Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I, Yutin, Natalya, Zerbini, F Murilo, Kuhn, Jens H

“…Viruses and mobile genetic elements are molecular parasites or symbionts that coevolve with nearly all forms of cellular life. The route of virus replication…”
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Revisiting the taxonomy of the family Circoviridae: establishment of the genus Cyclovirus and removal of the genus Gyrovirus Autor Rosario, Karyna, Breitbart, Mya, Harrach, Balázs, Segalés, Joaquim, Delwart, Eric, Biagini, Philippe, Varsani, Arvind

“…The family Circoviridae contains viruses with covalently closed, circular, single-stranded DNA (ssDNA) genomes, including the smallest known autonomously…”
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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses Autor Guo, Jiarong, Bolduc, Ben, Zayed, Ahmed A., Varsani, Arvind, Dominguez-Huerta, Guillermo, Delmont, Tom O., Pratama, Akbar Adjie, Gazitúa, M. Consuelo, Vik, Dean, Sullivan, Matthew B., Roux, Simon

“…Background Viruses are a significant player in many biosphere and human ecosystems, but most signals remain “hidden” in metagenomic/metatranscriptomic sequence…”
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Author Correction: Coronaviruses in diarrheic pigeons and the first determination of the complete genome of a new pigeon gammacoronavirus Autor Łukaszuk, Ewa, Dziewulska, Daria, Varsani, Arvind, Stenzel, Tomasz

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ICTV Virus Taxonomy Profile: Geminiviridae Autor Zerbini, F Murilo, Briddon, Rob W, Idris, Ali, Martin, Darren P, Moriones, Enrique, Navas-Castillo, Jesús, Rivera-Bustamante, Rafael, Roumagnac, Philippe, Varsani, Arvind, Ictv Report Consortium

“…The geminiviruses are a family of small, non-enveloped viruses with single-stranded, circular DNA genomes of 2500-5200 bases. Geminiviruses are transmitted by…”
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Sequence-based taxonomic framework for the classification of uncultured single-stranded DNA viruses of the family Genomoviridae Autor Varsani, Arvind, Krupovic, Mart

“…With the advent of metagenomics approaches, a large diversity of known and unknown viruses has been identified in various types of environmental, plant, and…”
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RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets Autor Martin, Darren P, Varsani, Arvind, Roumagnac, Philippe, Botha, Gerrit, Maslamoney, Suresh, Schwab, Tiana, Kelz, Zena, Kumar, Venkatesh, Murrell, Ben

“…Abstract For the past 20 years, the recombination detection program (RDP) project has focused on the development of a fast, flexible, and easy to use…”
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Kombucha: a novel model system for cooperation and conflict in a complex multi-species microbial ecosystem Autor May, Alexander, Narayanan, Shrinath, Alcock, Joe, Varsani, Arvind, Maley, Carlo, Aktipis, Athena

“…Kombucha, a fermented tea beverage with an acidic and effervescent taste, is composed of a multispecies microbial ecosystem with complex interactions that are…”
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Pervasive Chimerism in the Replication-Associated Proteins of Uncultured Single-Stranded DNA Viruses Autor Kazlauskas, Darius, Varsani, Arvind, Krupovic, Mart

“…Numerous metagenomic studies have uncovered a remarkable diversity of circular replication-associated protein (Rep)-encoding single-stranded (CRESS) DNA…”
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Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021) Autor Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Davison, Andrew J., Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Nibert, Max L., Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Suzuki, Nobuhiro, Van Dooerslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo

“…This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2021. The entire…”
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Coronaviruses in diarrheic pigeons and the first determination of the complete genome of a new pigeon gammacoronavirus Autor Łukaszuk, Ewa, Dziewulska, Daria, Varsani, Arvind, Stenzel, Tomasz

“…Members of Orthocoronavirinae subfamily are common among avian species and responsible for diseases in poultry. Unfortunately, knowledge of their diversity and…”
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Changes to virus taxonomy and the Statutes ratified by the International Committee on Taxonomy of Viruses (2020) Autor Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Dempsey, Donald M., Dutilh, Bas E., Harrach, Balázs, Harrison, Robert L., Hendrickson, R. Curtis, Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Orton, Richard J., Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B., Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J.

“…This article reports the changes to virus classification and taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in…”
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Virus taxonomy in the age of metagenomics Autor Simmonds, Peter, Adams, Mike J., Benkő, Mária, Breitbart, Mya, Brister, J. Rodney, Carstens, Eric B., Davison, Andrew J., Delwart, Eric, Gorbalenya, Alexander E., Harrach, Balázs, Hull, Roger, King, Andrew M.Q., Koonin, Eugene V., Krupovic, Mart, Kuhn, Jens H., Lefkowitz, Elliot J., Nibert, Max L., Orton, Richard, Roossinck, Marilyn J., Sabanadzovic, Sead, Sullivan, Matthew B., Suttle, Curtis A., Tesh, Robert B., van der Vlugt, René A., Varsani, Arvind, Zerbini, F. Murilo

“…Although viral sequences are important in taxonomy, classification has typically also required biological properties, thus excluding viruses that were…”
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