Search Results - "Terminal-restriction fragment length polymorphism"

Terminal restriction fragment length polymorphism is an “old school” reliable technique for swift microbial community screening in anaerobic digestion by De Vrieze, Jo, Ijaz, Umer Z., Saunders, Aaron M., Theuerl, Susanne

“…The microbial community in anaerobic digestion has been analysed through microbial fingerprinting techniques, such as terminal restriction fragment length polymorphism (TRFLP), for decades…”
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Comparison of the gut microbiota composition between obese and non-obese individuals in a Japanese population, as analyzed by terminal restriction fragment length polymorphism and next-generation sequencing by Kasai, Chika, Sugimoto, Kazushi, Moritani, Isao, Tanaka, Junichiro, Oya, Yumi, Inoue, Hidekazu, Tameda, Masahiko, Shiraki, Katsuya, Ito, Masaaki, Takei, Yoshiyuki, Takase, Kojiro

“… ) were collected and DNA was extracted prior to colonoscopy. After terminal restriction fragment length polymorphism (T-RFLP…”
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Bacterial community dynamics during ensiling of perennial ryegrass at two compaction levels monitored by terminal restriction fragment length polymorphism by Graf, K., Ulrich, A., Idler, C., Klocke, M.

“… Fermentation dynamics were examined using chemical analysis and terminal restriction fragment length polymorphism (TRFLP…”
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Interpreting ecological diversity indices applied to terminal restriction fragment length polymorphism data: insights from simulated microbial communities by Blackwood, Christopher B, Hudleston, Deborah, Zak, Donald R, Buyer, Jeffrey S

“…Ecological diversity indices are frequently applied to molecular profiling methods, such as terminal restriction fragment length polymorphism (T-RFLP…”
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Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis by Andoh, Akira, Imaeda, Hirotsugu, Aomatsu, Tomoki, Inatomi, Osamu, Bamba, Shigeki, Sasaki, Masaya, Saito, Yasuharu, Tsujikawa, Tomoyuki, Fujiyama, Yoshihide

“…Background Terminal restriction fragment length polymorphism (T-RFLP) analysis is a powerful tool to assess the diversity of a microbial community…”
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Comparison of human gut microbiota in control subjects and patients with colorectal carcinoma in adenoma: Terminal restriction fragment length polymorphism and next-generation sequencing analyses by KASAI, CHIKA, SUGIMOTO, KAZUSHI, MORITANI, ISAO, TANAKA, JUNICHIRO, OYA, YUMI, INOUE, HIDEKAZU, TAMEDA, MASAHIKO, SHIRAKI, KATSUYA, ITO, MASAAKI, TAKEI, YOSHIYUKI, TAKASE, KOJIRO

“… However, CRC-associated gut microbiota is still largely unexamined. This study used terminal restriction fragment length polymorphism (T-RFLP…”
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Intestinal Microbiota is Different in Women with Preterm Birth: Results from Terminal Restriction Fragment Length Polymorphism Analysis by Shiozaki, Arihiro, Yoneda, Satoshi, Yoneda, Noriko, Yonezawa, Rika, Matsubayashi, Takamichi, Seo, Genichiro, Saito, Shigeru

“… Using terminal restriction fragment length polymorphism (T-RFLP), we compared the levels of operational taxonomic units of both intestinal…”
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Characterization of gut microbiota profiles in coronary artery disease patients using data mining analysis of terminal restriction fragment length polymorphism: gut microbiota could be a diagnostic marker of coronary artery disease by Emoto, Takuo, Yamashita, Tomoya, Kobayashi, Toshio, Sasaki, Naoto, Hirota, Yushi, Hayashi, Tomohiro, So, Anna, Kasahara, Kazuyuki, Yodoi, Keiko, Matsumoto, Takuya, Mizoguchi, Taiji, Ogawa, Wataru, Hirata, Ken-ichi

“… Our aim of this study was to clarify the gut microbiota profiles in coronary artery disease patients using data mining analysis of terminal restriction fragment length polymorphism (T-RFLP…”
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Comparison of gut microbiota composition between laboratory‐bred marmosets (Callithrix jacchus) with chronic diarrhea and healthy animals using terminal restriction fragment length polymorphism analysis by Shigeno, Yuko, Toyama, Mutsumi, Nakamura, Mutsumi, Niimi, Kimie, Takahashi, Eiki, Benno, Yoshimi

“…‐bred marmosets, including 19 animals with chronic diarrhea, was analyzed using terminal restriction fragment length polymorphism…”
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Rumen bacterial community evaluated by 454 pyrosequencing and terminal restriction fragment length polymorphism analyses in dairy sheep fed marine algae by Castro-Carrera, T, Toral, P G, Frutos, P, McEwan, N R, Hervás, G, Abecia, L, Pinloche, E, Girdwood, S E, Belenguer, A

“… In this experiment, 454 pyrosequencing and a molecular fingerprinting technique (terminal restriction fragment length polymorphism; T-RFLP…”
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T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles by Smith, Cindy J., Danilowicz, Bret S., Clear, Adrian K., Costello, Fintan J., Wilson, Bryan, Meijer, Wim G.

“…Terminal restriction fragment length polymorphism (tRFLP) is a potentially high-throughput method for the analysis of complex microbial communities…”
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Advances in the use of terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes to characterize microbial communities by Schütte, Ursel M. E, Abdo, Zaid, Bent, Stephen J, Shyu, Conrad, Williams, Christopher J, Pierson, Jacob D, Forney, Larry J

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis is a popular high-throughput fingerprinting technique used to monitor changes in the structure and composition of microbial communities…”
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Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism by Hayashi, Hidenori, Takahashi, Rei, Nishi, Takahiro, Sakamoto, Mitsuo, Benno, Yoshimi

“… fragment length polymorphism (T-RFLP). Random clones of 16S rRNA gene sequences were isolated after PCR amplification with universal primer sets of total genomic DNA extracted from each sample of gut contents…”
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An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics by Osborn, A. Mark, Moore, Edward R. B., Timmis, Kenneth N.

“…A systematic evaluation of the value and potential of terminal‐restriction fragment length polymorphism (T‐RFLP…”
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'dirty' business: testing the limitations of terminal restriction fragment length polymorphism (TRFLP) analysis of soil fungi by Avis, Peter G, Dickie, Ian A, Mueller, Gregory M

“…Terminal restriction fragment length polymorphism (TRFLP) is an increasingly popular method in molecular ecology…”
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Methodological Aspects of Multiplex Terminal Restriction Fragment Length Polymorphism-Technique to Describe the Genetic Diversity of Soil Bacteria, Archaea and Fungi by Gryta, Agata, Frąc, Magdalena

“… control using microbial diversity biosensors. This work reports a method under development for determining soil microbial diversity using high efficiency Multiplex PCR-Terminal Restriction Fragment Length Polymorphism (M-T-RFLP…”
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Characterization of psychrotrophic bacterial communities in modified atmosphere-packed meat with terminal restriction fragment length polymorphism by Nieminen, T.T., Vihavainen, E., Paloranta, A., Lehto, J., Paulin, L., Auvinen, P., Solismaa, M., Björkroth, K.J.

“… restriction fragment length polymorphism (T-RFLP) method. An identification library consisting of 100 Gram-positive and 30 Gram-negative meat-associated bacterial strains…”
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Pros and Cons of Ion-Torrent Next Generation Sequencing versus Terminal Restriction Fragment Length Polymorphism T-RFLP for Studying the Rumen Bacterial Community by de la Fuente, Gabriel, Belanche, Alejandro, Girwood, Susan E., Pinloche, Eric, Wilkinson, Toby, Newbold, C. Jamie

“…) and terminal restriction fragment length polymorphism (T-RFLP). Although absolute number differed, there was a high correlation between NGS and T-RFLP in terms of richness and diversity with R values of 0.836…”
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Identification of infectious agents in onychomycoses by PCR-terminal restriction fragment length polymorphism by Verrier, Julie, Pronina, Marina, Peter, Corinne, Bontems, Olympia, Fratti, Marina, Salamin, Karine, Schürch, Stéphanie, Gindro, Katia, Wolfender, Jean-Luc, Harshman, Keith, Monod, Michel

“… In this study, we describe a PCR-terminal restriction fragment length polymorphism (TRFLP) assay to directly and routinely identify the infecting fungi in nails…”
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Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community by Singh, Brajesh K, Nazaries, Loic, Munro, Stacey, Anderson, Ian C, Campbell, Colin D

“…A multiplex terminal restriction fragment length polymorphism (M-TRFLP) fingerprinting method was developed and validated for simultaneous analysis of the diversity and community structure of two or more microbial taxa (up to four taxa…”
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