Search Results - "Terminal restriction fragment length polymorphism analysis"

Comparison of the fecal microbiota profiles between ulcerative colitis and Crohn's disease using terminal restriction fragment length polymorphism analysis by Andoh, Akira, Imaeda, Hirotsugu, Aomatsu, Tomoki, Inatomi, Osamu, Bamba, Shigeki, Sasaki, Masaya, Saito, Yasuharu, Tsujikawa, Tomoyuki, Fujiyama, Yoshihide

“…Background Terminal restriction fragment length polymorphism (T-RFLP) analysis is a powerful tool to assess the diversity of a microbial community. In this…”
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Intestinal Microbiota is Different in Women with Preterm Birth: Results from Terminal Restriction Fragment Length Polymorphism Analysis by Shiozaki, Arihiro, Yoneda, Satoshi, Yoneda, Noriko, Yonezawa, Rika, Matsubayashi, Takamichi, Seo, Genichiro, Saito, Shigeru

“…Preterm birth is a leading cause of perinatal morbidity and mortality. Studies using a cultivation method or molecular identification have shown that bacterial…”
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Comparison of gut microbiota composition between laboratory‐bred marmosets (Callithrix jacchus) with chronic diarrhea and healthy animals using terminal restriction fragment length polymorphism analysis by Shigeno, Yuko, Toyama, Mutsumi, Nakamura, Mutsumi, Niimi, Kimie, Takahashi, Eiki, Benno, Yoshimi

“…ABSTRACT Chronic diarrhea in laboratory‐bred marmosets poses a serious health problem during experiments. Despite a growing demand for laboratory‐bred…”
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Terminal Restriction Fragment Length Polymorphism Analysis of Soil Bacterial Communities under Different Vegetation Types in Subtropical Area by Wu, Zeyan, Lin, Wenxiong, Li, Bailian, Wu, Linkun, Fang, Changxun, Zhang, Zhixing

“…Soil microbes are active players in energy flow and material exchange of the forest ecosystems, but the research on the relationship between the microbial…”
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Evaluation of terminal-restriction fragment length polymorphism analysis in contrasting marine environments by Zhang, Rui, Thiyagarajan, Vengatesen, Qian, Pei-Yuan

“…Terminal-restriction fragment length polymorphism (T-RFLP) analysis is widely used in microbial ecology studies. In the present study, T-RFLP analysis of PCR…”
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Faecal microbiota profile of Crohn’s disease determined by terminal restriction fragment length polymorphism analysis by ANDOH, A., TSUJIKAWA, T., SASAKI, M., MITSUYAMA, K., SUZUKI, Y., MATSUI, T., MATSUMOTO, T., BENNO, Y., FUJIYAMA, Y.

“…Summary Background  Terminal restriction fragment length polymorphism (T‐RFLP) analyses are powerful tools to assess the diversity of complex microbiota…”
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Improved assessment of denitrifying, N2-fixing, and total-community bacteria by terminal restriction fragment length polymorphism analysis using multiple restriction enzymes by Rösch, Christopher, Bothe, Hermann

“…A database of terminal restriction fragments (tRFs) of the 16S rRNA gene was set up utilizing 13 restriction enzymes and 17,327 GenBank sequences. A computer…”
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New threshold and confidence estimates for terminal restriction fragment length polymorphism analysis of complex bacterial communities by Osborne, Catherine A, Rees, Gavin N, Bernstein, Yaniv, Janssen, Peter H

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis has the potential to be useful for comparisons of complex bacterial communities, especially…”
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Profile of Gut Bacteria in Hypertensive Patients Based on Terminal Restriction Fragment Length Polymorphism Analysis by Putri, Ririn Herni, Astuti, Rika Indri, Budiarti, Sri

“…Hypertension is a severe public health problem due to its high prevalence worldwide. About 7.5 million deaths or 12.8% of all annual deaths worldwide occur due…”
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Use of 16S rRNA gene profiling by terminal restriction fragment length polymorphism analysis to compare bacterial communities in sputum and mouthwash samples from patients with cystic fibrosis by Rogers, G B, Carroll, M P, Serisier, D J, Hockey, P M, Jones, G, Kehagia, V, Connett, G J, Bruce, K D

“…) patients were compared by using terminal restriction fragment length polymorphism analysis of 16S rRNA gene PCR products amplified from nucleic acids extracted directly from bacteria in clinical samples…”
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TRiFLe, a program for in silico terminal restriction fragment length polymorphism analysis with user-defined sequence sets by Junier, Pilar, Junier, Thomas, Witzel, Karl-Paul

“…We describe TRiFLe, a freely accessible computer program that generates theoretical terminal restriction fragments (T-RFs) from any user-supplied sequence set…”
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Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes by Braker, G, Ayala-del-Río, H L, Devol, A H, Fesefeldt, A, Tiedje, J M

“…Steep vertical gradients of oxidants (O(2) and NO(3)(-)) in Puget Sound and Washington continental margin sediments indicate that aerobic respiration and…”
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Combined bromodeoxyuridine immunocapture and terminal-restriction fragment length polymorphism analysis highlights differences in the active soil bacterial metagenome due to Glomus mosseae inoculation or plant species by Artursson, Veronica, Finlay, Roger D., Jansson, Janet K.

“…Summary High numbers of bacteria are associated with arbuscular mycorrhizal (AM) fungi, but their functions and in situ activities are largely unknown and most…”
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Improved dsrA-based terminal restriction fragment length polymorphism analysis of sulfate-reducing bacteria by Santillano, Daniel, Boetius, Antje, Ramette, Alban

“…To better describe the community structure of sulfate-reducing bacteria in environmental systems, we compared several dissimilatory sulfite reductase (dsr)…”
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Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure by Egert, Markus, Friedrich, Michael W

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis of PCR-amplified genes is a widely used fingerprinting technique in molecular microbial…”
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Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis by Andoh, Akira, Sakata, Shinji, Koizumi, Yuhsuke, Mitsuyama, Keiichi, Fujiyama, Yoshihide, Benno, Yoshimi

“…BackgroundTerminal restriction fragment length polymorphism (T-RFLP) analysis is a powerful tool to assess the diversity of complexed microbiota. This permits…”
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Terminal restriction fragment length polymorphism analysis program, a web-based research tool for microbial community analysis by Marsh, T L, Saxman, P, Cole, J, Tiedje, J

“…Rapid analysis of microbial communities has proven to be a difficult task. This is due, in part, to both the tremendous diversity of the microbial world and…”
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REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis by Collins, Roy Eric, Rocap, Gabrielle

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis is a widespread technique for rapidly fingerprinting microbial communities. Users of T-RFLP…”
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Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts by Lueders, Tillmann, Friedrich, Michael W

“…Terminal restriction fragment length polymorphism (T-RFLP) analysis is a widely used method for profiling microbial community structure in different habitats…”
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BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer–enzyme–sequence databases by Stres, Blaž, Tiedje, James M., Murovec, Boštjan

“…BEsTRF (Best Estimated T-RF) provides a standalone environment for analyzing primers-enzymes-gene section combinations used in terminal-restriction fragment…”
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