Suchergebnisse - "Strope, Pooja K"

Rapid and sensitive detection of genome contamination at scale with FCS-GX von Astashyn, Alexander, Tvedte, Eric S., Sweeney, Deacon, Sapojnikov, Victor, Bouk, Nathan, Joukov, Victor, Mozes, Eyal, Strope, Pooja K., Sylla, Pape M., Wagner, Lukas, Bidwell, Shelby L., Brown, Larissa C., Clark, Karen, Davis, Emily W., Smith-White, Brian, Hlavina, Wratko, Pruitt, Kim D., Schneider, Valerie A., Murphy, Terence D.

“… Assembled genome sequences are being generated at an exponential rate. Here we present FCS-GX, part of NCBI’s Foreign Contamination Screen (FCS) tool suite, …”
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NCBI RefSeq: reference sequence standards through 25 years of curation and annotation von Goldfarb, Tamara, Kodali, Vamsi K, Pujar, Shashikant, Brover, Vyacheslav, Robbertse, Barbara, Farrell, Catherine M, Oh, Dong-Ha, Astashyn, Alexander, Ermolaeva, Olga, Haddad, Diana, Hlavina, Wratko, Hoffman, Jinna, Jackson, John D, Joardar, Vinita S, Kristensen, David, Masterson, Patrick, McGarvey, Kelly M, McVeigh, Richard, Mozes, Eyal, Murphy, Michael R, Schafer, Susan S, Souvorov, Alexander, Spurrier, Brett, Strope, Pooja K, Sun, Hanzhen, Vatsan, Anjana R, Wallin, Craig, Webb, David, Brister, J Rodney, Hatcher, Eneida, Kimchi, Avi, Klimke, William, Marchler-Bauer, Aron, Pruitt, Kim D, Thibaud-Nissen, Françoise, Murphy, Terence D

“… Reference sequences and annotations serve as the foundation for many lines of research today, from organism and sequence identification to providing a core …”
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Molecular evolution of urea amidolyase and urea carboxylase in fungi von Strope, Pooja K, Nickerson, Kenneth W, Harris, Steven D, Moriyama, Etsuko N

“… Background Urea amidolyase breaks down urea into ammonia and carbon dioxide in a two-step process, while another enzyme, urease, does this in a one …”
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2μ plasmid in Saccharomyces species and in Saccharomyces cerevisiae von Strope, Pooja K., Kozmin, Stanislav G., Skelly, Daniel A., Magwene, Paul M., Dietrich, Fred S., McCusker, John H.

“… We determined that extrachromosomal 2μ plasmid was present in 67 of the Saccharomyces cerevisiae 100-genome strains; in addition to variation in the size and …”
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The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen von Strope, Pooja K, Skelly, Daniel A, Kozmin, Stanislav G, Mahadevan, Gayathri, Stone, Eric A, Magwene, Paul M, Dietrich, Fred S, McCusker, John H

“… Saccharomyces cerevisiae, a well-established model for species as diverse as humans and pathogenic fungi, is more recently a model for population and …”
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RNA viruses, M satellites, chromosomal killer genes, and killer/nonkiller phenotypes in the 100-genomes S. cerevisiae strains von Vijayraghavan, Sriram, Kozmin, Stanislav G, Strope, Pooja K, Skelly, Daniel A, Magwene, Paul M, Dietrich, Fred S, McCusker, John H

“… Abstract We characterized previously identified RNA viruses (L-A, L-BC, 20S, and 23S), L-A–dependent M satellites (M1, M2, M28, and Mlus), and M …”
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Mitochondrial Genome Variation Affects Multiple Respiration and Nonrespiration Phenotypes in Saccharomyces cerevisiae von Vijayraghavan, Sriram, Kozmin, Stanislav G, Strope, Pooja K, Skelly, Daniel A, Lin, Zhenguo, Kennell, John, Magwene, Paul M, Dietrich, Fred S, McCusker, John H

“… Mitochondrial genome variation and its effects on phenotypes have been widely analyzed in higher eukaryotes but less so in the model eukaryote Saccharomyces …”
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Improving taxonomic accuracy for fungi in public sequence databases: applying ‘one name one species’ in well-defined genera with Trichoderma/Hypocrea as a test case von Robbertse, Barbara, Strope, Pooja K, Chaverri, Priscila, Gazis, Romina, Ciufo, Stacy, Domrachev, Michael, Schoch, Conrad L

“… The ITS (nuclear ribosomal internal transcribed spacer) RefSeq database at the National Center for Biotechnology Information (NCBI) is dedicated to the clear …”
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Structures of Naturally Evolved CUP1 Tandem Arrays in Yeast Indicate That These Arrays Are Generated by Unequal Nonhomologous Recombination von Zhao, Ying, Strope, Pooja K, Kozmin, Stanislav G, McCusker, John H, Dietrich, Fred S, Kokoska, Robert J, Petes, Thomas D

“… Abstract An important issue in genome evolution is the mechanism by which tandem duplications are generated from single-copy genes. In the yeast Saccharomyces …”
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Mining the Arabidopsis thaliana genome for highly-divergent seven transmembrane receptors von Moriyama, Etsuko N, Strope, Pooja K, Opiyo, Stephen O, Chen, Zhongying, Jones, Alan M

“… To identify divergent seven-transmembrane receptor (7TMR) candidates from the Arabidopsis thaliana genome, multiple protein classification methods were …”
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Simple alignment-free methods for protein classification: A case study from G-protein-coupled receptors von Strope, Pooja K., Moriyama, Etsuko N.

“… Computational methods of predicting protein functions rely on detecting similarities among proteins. However, sufficient sequence information is not always …”
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Rapid and sensitive detection of genome contamination at scale with FCS-GX von Astashyn, Alexander, Tvedte, Eric S, Sweeney, Deacon, Sapojnikov, Victor, Bouk, Nathan, Joukov, Victor, Mozes, Eyal, Strope, Pooja K, Sylla, Pape M, Wagner, Lukas, Bidwell, Shelby L, Clark, Karen, Davis, Emily W, Smith-White, Brian, Hlavina, Wratko, Pruitt, Kim D, Schneider, Valerie A, Murphy, Terence D

“… Assembled genome sequences are being generated at an exponential rate. Here we present FCS-GX, part of NCBI's Foreign Contamination Screen (FCS) tool suite, …”
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Functional classification of divergent protein sequences and molecular evolution of multi-domain proteins von Strope, Pooja K

“… Transmembrane proteins and multi-domain proteins together make up more than 80% of the total proteins in any eukaryotic proteome. Therefore accurately …”
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