Výsledky vyhľadávania - "Stochastic simulation algorithms"

Stochastic simulation algorithms for query networks Autor Cousins, S B, Frisse, M E, Chen, W, Mead, C N

“… Stochastic simulation algorithms allow one to compute approximations of probability values in a reasonable amount of time…”
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Mathematical Modeling in Systems Biology

“…The reprint presents a collection of systems biology-related topics and new studies that utilize computational, mathematical, and systems-oriented approaches…”
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Quantifying Parameter Interdependence in Stochastic Discrete Models of Biochemical Systems Autor Gholami, Samaneh, Ilie, Silvana

“…Stochastic modeling of biochemical processes at the cellular level has been the subject of intense research in recent years…”
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CERENA: ChEmical REaction Network Analyzer—A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics Autor Kazeroonian, Atefeh, Fröhlich, Fabian, Raue, Andreas, Theis, Fabian J., Hasenauer, Jan

“… CERENA implements stochastic simulation algorithms…”
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Stochastic Simulation of Imperfect Mixing in Free Radical Polymerization Autor Hernandez, Hugo F, Tauer, Klaus

“…A modified algorithm for the stochastic simulation of chemical reactions subject to mass transfer limitation (imperfect mixing) is presented…”
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Variance Reduction Techniques for Chemical Reaction Network Simulation Autor Beentjes, Casper H. L

“…In recent decades stochastic models have become an indispensable tool when analysing quantitative biological data, which are often subject to noise, both from intrinsic and extrinsic sources…”
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Noise-induced entrainment of the circadian clock by thermoperiods in tomato: A computational approach Autor Huang, Ting, Lv, Hengmin, Shu, Yiting, Luo, Jian, Yu, Linxuan, Chen, Bing, Sun, Xin, Hou, Xilin, You, Xiong, Zhang, Tonghua

“… Model simulations by the stochastic simulation algorithm showed warm temperatures resulting in an advanced phase…”
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Scalable Methods for Modelling Complex Biochemical Networks Autor Ollivier, Julien F

“…In cells, complex networks of interacting biomolecules process both environmental and endogenous signals to control gene expression and other cellular…”
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Noisy attractors and ergodic sets in models of gene regulatory networks Autor Ribeiro, Andre S., Kauffman, Stuart A.

“… of “ergodic set” as a set of states from which the system, once entering, does not leave when subject to internal noise, first, using the Boolean network model, we show that if all nodes of states on attractors…”
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SGN Sim, a Stochastic Genetic Networks Simulator Autor Ribeiro, Andre S., Lloyd-Price, Jason

“…) where transcription and translation are modeled as multiple time delayed events and its dynamics is driven by a stochastic simulation algorithm (SSA…”
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A Performance-Based Wind Engineering Framework for Engineered Building Systems Subject to Hurricanes Autor Ouyang, Zhicheng, Spence, Seymour M.J.

“…Over the past decade, significant research efforts have been dedicated to the development of performance-based wind engineering (PBWE). Notwithstanding these…”
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A low-rank complexity reduction algorithm for the high-dimensional kinetic chemical master equation Autor Einkemmer, Lukas, Mangott, Julian, Prugger, Martina

“…). This approach, compared to the commonly used stochastic simulation algorithm (SSA, a Monte Carlo method…”
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A Practicable Method of Tuning the Noise Intensity at Protein Level Autor Lo, Shih-Chiang, You, Chao-Xuan, Shu, Che-Chi

“…The expression of genes is inevitably subject to intracellular noise. Noise, for some regulatory networks, is constructive but detrimental to many others…”
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General network reliability problem and its efficient solution by Subset Simulation Autor Zuev, Konstantin M., Wu, Stephen, Beck, James L.

“…Complex technological networks designed for distribution of some resource or commodity are a pervasive feature of modern society. Moreover, the dependence of…”
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CellLine, a stochastic cell lineage simulator Autor Ribeiro, Andre S., Charlebois, Daniel A., Lloyd-Price, Jason

“… Each cell's dynamics is driven by a delayed stochastic simulation algorithm (delayed SSA), allowing multiple time delayed reactions…”
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Predicting Multivariate Insurance Loss Payments Under the Bayesian Copula Framework Autor Zhang, Yanwei, Dukic, Vanja

“… We derive a full Bayesian stochastic simulation algorithm that can estimate parameters in this class of models…”
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Stochastic simulations of the Schnakenberg model with spatial inhomogeneities using reactive multiparticle collision dynamics Autor Sayyidmousavi, Alireza, Rohlf, Katrin

“…A numerically efficient globally averaged number density approach is used to simulate a reaction-diffusion system using a particle-based stochastic simulation algorithm called reactive multiparticle collision (RMPC) dynamics…”
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A kinetic Monte Carlo simulation study of inositol 1,4,5-trisphosphate receptor (IP3R) calcium release channel Autor Haeri, H.H., Hashemianzadeh, S.M., Monajjemi, M.

“… Because of the limitations of this approach we have used a stochastic simulation algorithm (SSA) presented by Gillespie…”
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Design Parameters for Granzyme-Mediated Cytotoxic Lymphocyte Target-Cell Killing and Specificity Autor Woodsworth, Daniel J, Dunsing, Valentin, Coombs, Daniel

“… Due to its central role in lymphocyte biology, as well as its implication in a host of pathologies from cancer to autoimmunity, the granzyme-perforin pathway has been the subject of extensive investigation…”
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A low-rank complexity reduction algorithm for the high-dimensional kinetic chemical master equation Autor Einkemmer, Lukas, Mangott, Julian, Prugger, Martina

“…). This approach, compared to the commonly used stochastic simulation algorithm (SSA, a Monte Carlo method…”
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