Search Results - "Stochastic Simulation Algorithm"

Block Search Stochastic Simulation Algorithm (BlSSSA): A Fast Stochastic Simulation Algorithm for Modeling Large Biochemical Networks by Ghosh, Debraj, De, Rajat K.

“…Stochastic simulation algorithms are extensively used for exploring stochastic behavior of biochemical pathways/networks…”
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Selected-node stochastic simulation algorithm by Duso, Lorenzo, Zechner, Christoph

“… Here we introduce the selected-node stochastic simulation algorithm (snSSA), which allows us to exclusively simulate an arbitrary, selected subset of molecular species of a possibly large and complex reaction network…”
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Accurate stochastic simulation algorithm for multiscale models of infectious diseases by Yin, Yuan, Flegg, Jennifer A., Flegg, Mark B.

“… and transition stochastically. Classic stochastic simulation algorithms…”
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The slow-scale stochastic simulation algorithm by Cao, Yang, Gillespie, Daniel T, Petzold, Linda R

“…Reactions in real chemical systems often take place on vastly different time scales, with "fast" reaction channels firing very much more frequently than "slow"…”
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Stochastic simulation algorithm for isotope-based dynamic flux analysis by Thommen, Quentin, Hurbain, Julien, Pfeuty, Benjamin

“…), but lacks generalizability to non-stationary metabolic conditions. In this study, we present a stochastic simulation algorithm (SSA…”
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S-Leaping: An Adaptive, Accelerated Stochastic Simulation Algorithm, Bridging τ-Leaping and R-Leaping by Lipková, Jana, Arampatzis, Georgios, Chatelain, Philippe, Menze, Bjoern, Koumoutsakos, Petros

“…We propose the S -leaping algorithm for the acceleration of Gillespie’s stochastic simulation algorithm that combines the advantages of the two main accelerated methods; the τ…”
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Learning high-order spatial statistics at multiple scales: A kernel-based stochastic simulation algorithm and its implementation by Yao, Lingqing, Dimitrakopoulos, Roussos, Gamache, Michel

“…This paper presents a learning-based stochastic simulation method that incorporates high-order spatial statistics at multiple scales from sources with…”
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A hybrid smoothed dissipative particle dynamics (SDPD) spatial stochastic simulation algorithm (sSSA) for advection–diffusion–reaction problems by Drawert, Brian, Jacob, Bruno, Li, Zhen, Yi, Tau-Mu, Petzold, Linda

“…We have developed a new algorithm which merges discrete stochastic simulation, using the spatial stochastic simulation algorithm (sSSA…”
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An Evaluation Approach for Physical Education Teaching Practice Quality Using Stochastic Simulation Algorithm by Zhou, Changlei, Ma, Tingting

“… as teaching practice quality, based on stochastic simulation algorithm, is put forward. Then, we construct the constraint parameter model of institution physical education…”
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Efficient formulation of the stochastic simulation algorithm for chemically reacting systems by Cao, Yang, Li, Hong, Petzold, Linda

“…In this paper we examine the different formulations of Gillespie's stochastic simulation algorithm (SSA) [D. Gillespie, J. Phys. Chem. 81, 2340 (1977…”
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Analysis and remedy of negativity problem in hybrid stochastic simulation algorithm and its application by Chen, Minghan, Cao, Yang

“…Background The hybrid stochastic simulation algorithm, proposed by Haseltine and Rawlings (HR…”
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Applications of the Delay Stochastic Simulation Algorithm (DSSA) in Mathematical Epidemiology by Bai, Fan

“…) epidemic models also hold for the stochastic epidemic models with fixed delays. All theoretical results are verified by numerical simulations implemented by the delay stochastic simulation algorithm (DSSA) in Python…”
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R-leaping: accelerating the stochastic simulation algorithm by reaction leaps by Auger, Anne, Chatelain, Philippe, Koumoutsakos, Petros

“…A novel algorithm is proposed for the acceleration of the exact stochastic simulation algorithm by a predefined number of reaction firings (R-leaping…”
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Constant-complexity stochastic simulation algorithm with optimal binning by Sanft, Kevin R, Othmer, Hans G

“… described by the chemical master equation. Gillespie's Stochastic Simulation Algorithm (SSA) generates exact trajectories of these systems, but the amount of computational work required…”
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Gillespie’s Stochastic Simulation Algorithm on MIC coprocessors by Tangherloni, Andrea, Nobile, Marco S., Cazzaniga, Paolo, Besozzi, Daniela, Mauri, Giancarlo

“…To investigate the behavior of biochemical systems, many runs of Gillespie’s Stochastic Simulation Algorithm (SSA…”
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Refining the weighted stochastic simulation algorithm by Gillespie, Dan T, Roh, Min, Petzold, Linda R

“…The weighted stochastic simulation algorithm (wSSA) recently introduced by Kuwahara and Mura [J. Chem. Phys. 129, 165101 (2008…”
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A new stochastic simulation algorithm for updating robust reliability of linear structural dynamic systems subjected to future Gaussian excitations by Bansal, Sahil, Cheung, Sai Hung

“…In this paper, we are interested in using system response data to update the robust failure probability that any particular response of a linear structural…”
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Retracted: An Evaluation Approach for Physical Education Teaching Practice Quality Using Stochastic Simulation Algorithm by Systems, Mobile Information

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Accuracy Analysis of Hybrid Stochastic Simulation Algorithm on Linear Chain Reaction Systems by Chen, Minghan, Wang, Shuo, Cao, Yang

“…Noise in cellular systems is often modeled and simulated with Gillespie’s stochastic simulation algorithm (SSA…”
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HOSIM: A high-order stochastic simulation algorithm for generating three-dimensional complex geological patterns by Mustapha, Hussein, Dimitrakopoulos, Roussos

“…The three-dimensional high-order simulation algorithm HOSIM is developed to simulate complex non-linear and non-Gaussian systems. HOSIM is an alternative to…”
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