Výsledky vyhľadávania - "Schneider, Valerie A"

Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV) Autor Rangwala, Sanjida H, Kuznetsov, Anatoliy, Ananiev, Victor, Asztalos, Andrea, Borodin, Evgeny, Evgeniev, Vladislav, Joukov, Victor, Lotov, Vadim, Pannu, Ravinder, Rudnev, Dmitry, Shkeda, Andrew, Weitz, Eric M, Schneider, Valerie A

“…The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Bourexis, Devon, Brister, James R, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Kim, Sunghwan, Klimke, William, Marchler-Bauer, Aron, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, O’Leary, Nuala, Phan, Lon, Rangwala, Sanjida H, Schneider, Valerie A, Skripchenko, Yuri, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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Database resources of the National Center for Biotechnology Information in 2025 Autor Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Brister, J Rodney, Chan, Jessica, Connor, Ryan, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hoffman, Jinna, Kannan, Sivakumar, Kelly, Christopher, Klimke, William, Kim, Sunghwan, Lathrop, Stacy, Marchler-Bauer, Aron, Murphy, Terence D, O’Sullivan, Chris, Schmieder, Erin, Skripchenko, Yuriy, Stine, Adam, Thibaud-Nissen, Francoise, Wang, Jiyao, Ye, Jian, Zellers, Erin, Schneider, Valerie A, Pruitt, Kim D

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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Rapid and sensitive detection of genome contamination at scale with FCS-GX Autor Astashyn, Alexander, Tvedte, Eric S., Sweeney, Deacon, Sapojnikov, Victor, Bouk, Nathan, Joukov, Victor, Mozes, Eyal, Strope, Pooja K., Sylla, Pape M., Wagner, Lukas, Bidwell, Shelby L., Brown, Larissa C., Clark, Karen, Davis, Emily W., Smith-White, Brian, Hlavina, Wratko, Pruitt, Kim D., Schneider, Valerie A., Murphy, Terence D.

“…Assembled genome sequences are being generated at an exponential rate. Here we present FCS-GX, part of NCBI’s Foreign Contamination Screen (FCS) tool suite,…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Beck, Jeff, Brister, J Rodney, Bolton, Evan E, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Ketter, Anne, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Kuznetsov, Anatoliy, Lathrop, Stacy, Lu, Zhiyong, McGarvey, Kelly, Madden, Thomas L, Murphy, Terence D, O’Leary, Nuala, Phan, Lon, Schneider, Valerie A, Thibaud-Nissen, Françoise, Trawick, Bart W, Pruitt, Kim D, Ostell, James

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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Database resources of the National Center for Biotechnology Information Autor Sayers, Eric W, Agarwala, Richa, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Clark, Karen, Connor, Ryan, Fiorini, Nicolas, Funk, Kathryn, Hefferon, Timothy, Holmes, J Bradley, Kim, Sunghwan, Kimchi, Avi, Kitts, Paul A, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Marchler-Bauer, Aron, Phan, Lon, Schneider, Valerie A, Schoch, Conrad L, Pruitt, Kim D, Ostell, James

“…Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the…”
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The NIH Comparative Genomics Resource: addressing the promises and challenges of comparative genomics on human health Autor Bornstein, Kristin, Gryan, Gary, Chang, E. Sally, Marchler-Bauer, Aron, Schneider, Valerie A.

“…Comparative genomics is the comparison of genetic information within and across organisms to understand the evolution, structure, and function of genes,…”
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The international nucleotide sequence database collaboration (INSDC): enhancing global participation Autor Karsch-Mizrachi, Ilene, Arita, Masanori, Burdett, Tony, Cochrane, Guy, Nakamura, Yasukazu, Pruitt, Kim D, Schneider, Valerie A, Of The International Nucleotide Sequence Database Collaboration, On Behalf

“…The members of the International Nucleotide Sequence Database Collaboration (INSDC; https://insdc.org) have built systems to collect, archive and disseminate…”
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Exploring and retrieving sequence and metadata for species across the tree of life with NCBI Datasets Autor O’Leary, Nuala A., Cox, Eric, Holmes, J. Bradley, Anderson, W. Ray, Falk, Robert, Hem, Vichet, Tsuchiya, Mirian T. N., Schuler, Gregory D., Zhang, Xuan, Torcivia, John, Ketter, Anne, Breen, Laurie, Cothran, Jonathan, Bajwa, Hena, Tinne, Jovany, Meric, Peter A., Hlavina, Wratko, Schneider, Valerie A.

“…To explore complex biological questions, it is often necessary to access various data types from public data repositories. As the volume and complexity of…”
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Single haplotype assembly of the human genome from a hydatidiform mole Autor Steinberg, Karyn Meltz, Schneider, Valerie A, Graves-Lindsay, Tina A, Fulton, Robert S, Agarwala, Richa, Huddleston, John, Shiryev, Sergey A, Morgulis, Aleksandr, Surti, Urvashi, Warren, Wesley C, Church, Deanna M, Eichler, Evan E, Wilson, Richard K

“…A complete reference assembly is essential for accurately interpreting individual genomes and associating variation with phenotypes. While the current human…”
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The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments Autor Rangwala, Sanjida H., Rudnev, Dmitry V., Ananiev, Victor V., Oh, Dong-Ha, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A., Bouk, Nathan, Evgeniev, Vladislav I., Kodali, Vamsi K., Lotov, Vadim, Mozes, Eyal, Omelchenko, Marina V., Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D., Pruitt, Kim D., Schneider, Valerie A.

“…We report a new visualization tool for analysis of whole-genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) (…”
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The dbGaP data browser: a new tool for browsing dbGaP controlled-access genomic data Autor Wong, Kira M., Langlais, Kristofor, Tobias, Geoffrey S., Fletcher-Hoppe, Colette, Krasnewich, Donna, Leeds, Hilary S., Rodriguez, Laura Lyman, Godynskiy, Georgy, Schneider, Valerie A., Ramos, Erin M., Sherry, Stephen T.

“…The database of Genotypes and Phenotypes (dbGaP) Data Browser (https://www.ncbi.nlm.nih.gov/gap/ddb/) was developed in response to requests from the scientific…”
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The Genome of C57BL/6J “Eve”, the Mother of the Laboratory Mouse Genome Reference Strain Autor Sarsani, Vishal Kumar, Raghupathy, Narayanan, Fiddes, Ian T, Armstrong, Joel, Thibaud-Nissen, Francoise, Zinder, Oraya, Bolisetty, Mohan, Howe, Kerstin, Hinerfeld, Doug, Ruan, Xiaoan, Rowe, Lucy, Barter, Mary, Ananda, Guruprasad, Paten, Benedict, Weinstock, George M, Churchill, Gary A, Wiles, Michael V, Schneider, Valerie A, Srivastava, Anuj, Reinholdt, Laura G

“…Abstract Isogenic laboratory mouse strains enhance reproducibility because individual animals are genetically identical. For the most widely used isogenic…”
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The myotomal diwanka (lh3) glycosyltransferase and type XVIII collagen are critical for motor growth cone migration Autor Schneider, Valerie A, Granato, Michael

“…The initial migration of motor growth cones from the spinal cord into the periphery requires extrinsic cues, yet their identities are largely unknown. In…”
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A Novel Role for Lh3 Dependent ECM Modifications during Neural Crest Cell Migration in Zebrafish Autor Banerjee, Santanu, Isaacman-Beck, Jesse, Schneider, Valerie A., Granato, Michael

“…During vertebrate development, trunk neural crest cells delaminate along the entire length of the dorsal neural tube and initially migrate as a non-segmented…”
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Database resources of the National Center for Biotechnology Information in 2023 Autor Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Kannan, Sivakumar, Kelly, Christopher, Kim, Sunghwan, Klimke, William, Landrum, Melissa J, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Pujar, Shashikant, Rangwala, Sanjida H, Schneider, Valerie A, Tse, Tony, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“…The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence…”
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The Human Pangenome Project: a global resource to map genomic diversity Autor Wang, Ting, Antonacci-Fulton, Lucinda, Howe, Kerstin, Lawson, Heather A., Lucas, Julian K., Phillippy, Adam M., Popejoy, Alice B., Asri, Mobin, Carson, Caryn, Chaisson, Mark J. P., Chang, Xian, Cook-Deegan, Robert, Felsenfeld, Adam L., Fulton, Robert S., Garrison, Erik P., Garrison, Nanibaa’ A., Graves-Lindsay, Tina A., Ji, Hanlee, Kenny, Eimear E., Koenig, Barbara A., Li, Daofeng, Marschall, Tobias, McMichael, Joshua F., Novak, Adam M., Purushotham, Deepak, Schneider, Valerie A., Schultz, Baergen I., Smith, Michael W., Sofia, Heidi J., Weissman, Tsachy, Flicek, Paul, Li, Heng, Miga, Karen H., Paten, Benedict, Jarvis, Erich D., Hall, Ira M., Eichler, Evan E., Haussler, David

“…The human reference genome is the most widely used resource in human genetics and is due for a major update. Its current structure is a linear composite of…”
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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly Autor Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M

“…The human reference genome assembly plays a central role in nearly all aspects of today's basic and clinical research. GRCh38 is the first coordinate-changing…”
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GenBank 2025 update Autor Sayers, Eric W, Cavanaugh, Mark, Frisse, Linda, Pruitt, Kim D, Schneider, Valerie A, Underwood, Beverly A, Yankie, Linda, Karsch-Mizrachi, Ilene

“…GenBank® (https://www.ncbi.nlm.nih.gov/genbank/) is a comprehensive, public data repository that contains 34 trillion base pairs from over 4.7 billion…”
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High-resolution comparative analysis of great ape genomes Autor Kronenberg, Zev N, Fiddes, Ian T, Gordon, David, Murali, Shwetha, Cantsilieris, Stuart, Meyerson, Olivia S, Underwood, Jason G, Nelson, Bradley J, Chaisson, Mark J P, Dougherty, Max L, Munson, Katherine M, Hastie, Alex R, Diekhans, Mark, Hormozdiari, Fereydoun, Lorusso, Nicola, Hoekzema, Kendra, Qiu, Ruolan, Clark, Karen, Raja, Archana, Welch, AnneMarie E, Sorensen, Melanie, Baker, Carl, Fulton, Robert S, Armstrong, Joel, Graves-Lindsay, Tina A, Denli, Ahmet M, Hoppe, Emma R, Hsieh, PingHsun, Hill, Christopher M, Pang, Andy Wing Chun, Lee, Joyce, Lam, Ernest T, Dutcher, Susan K, Gage, Fred H, Warren, Wesley C, Shendure, Jay, Haussler, David, Schneider, Valerie A, Cao, Han, Ventura, Mario, Wilson, Richard K, Paten, Benedict, Pollen, Alex, Eichler, Evan E

“…Genetic studies of human evolution require high-quality contiguous ape genome assemblies that are not guided by the human reference. We coupled long-read…”
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