Suchergebnisse - "Rangwala, Sanjida H"

Accessing NCBI data using the NCBI Sequence Viewer and Genome Data Viewer (GDV) von Rangwala, Sanjida H, Kuznetsov, Anatoliy, Ananiev, Victor, Asztalos, Andrea, Borodin, Evgeny, Evgeniev, Vladislav, Joukov, Victor, Lotov, Vadim, Pannu, Ravinder, Rudnev, Dmitry, Shkeda, Andrew, Weitz, Eric M, Schneider, Valerie A

“… The National Center for Biotechnology Information (NCBI) is an archive providing free access to a wide range and large volume of biological sequence data and …”
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Database resources of the National Center for Biotechnology Information von Sayers, Eric W, Beck, Jeffrey, Bolton, Evan E, Bourexis, Devon, Brister, James R, Canese, Kathi, Comeau, Donald C, Funk, Kathryn, Kim, Sunghwan, Klimke, William, Marchler-Bauer, Aron, Landrum, Melissa, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, O’Leary, Nuala, Phan, Lon, Rangwala, Sanjida H, Schneider, Valerie A, Skripchenko, Yuri, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“… Abstract The National Center for Biotechnology Information (NCBI) provides a large suite of online resources for biological information and data, including the …”
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Database resources of the National Center for Biotechnology Information in 2023 von Sayers, Eric W, Bolton, Evan E, Brister, J Rodney, Canese, Kathi, Chan, Jessica, Comeau, Donald C, Farrell, Catherine M, Feldgarden, Michael, Fine, Anna M, Funk, Kathryn, Hatcher, Eneida, Kannan, Sivakumar, Kelly, Christopher, Kim, Sunghwan, Klimke, William, Landrum, Melissa J, Lathrop, Stacy, Lu, Zhiyong, Madden, Thomas L, Malheiro, Adriana, Marchler-Bauer, Aron, Murphy, Terence D, Phan, Lon, Pujar, Shashikant, Rangwala, Sanjida H, Schneider, Valerie A, Tse, Tony, Wang, Jiyao, Ye, Jian, Trawick, Barton W, Pruitt, Kim D, Sherry, Stephen T

“… The National Center for Biotechnology Information (NCBI) provides online information resources for biology, including the GenBank® nucleic acid sequence …”
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The NCBI Comparative Genome Viewer (CGV) is an interactive visualization tool for the analysis of whole-genome eukaryotic alignments von Rangwala, Sanjida H., Rudnev, Dmitry V., Ananiev, Victor V., Oh, Dong-Ha, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A., Bouk, Nathan, Evgeniev, Vladislav I., Kodali, Vamsi K., Lotov, Vadim, Mozes, Eyal, Omelchenko, Marina V., Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D., Pruitt, Kim D., Schneider, Valerie A.

“… We report a new visualization tool for analysis of whole-genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) ( …”
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Many LINE1 elements contribute to the transcriptome of human somatic cells von Rangwala, Sanjida H, Zhang, Lili, Kazazian, Haig H

“… Background While LINE1 (L1) retroelements comprise nearly 20% of the human genome, the majority are thought to have been rendered transcriptionally inactive, …”
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation von O'Leary, Nuala A, Wright, Mathew W, Brister, J Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M, Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S, Kodali, Vamsi K, Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M, Murphy, Michael R, O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H, Rausch, Daniel, Riddick, Lillian D, Schoch, Conrad, Shkeda, Andrei, Storz, Susan S, Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E, Vatsan, Anjana R, Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J, Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D, Pruitt, Kim D

“… The RefSeq project at the National Center for Biotechnology Information (NCBI) maintains and curates a publicly available database of annotated genomic, …”
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Differential epigenetic regulation within an Arabidopsis retroposon family von Rangwala, S.H, Richards, E.J

“… We previously reported a novel family of Arabidopsis thaliana nonautonomous retroposons, Sadhu, showing epigenetic variation in natural populations. Here, we …”
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RefSeq: an update on mammalian reference sequences von Pruitt, Kim D., Brown, Garth R., Hiatt, Susan M., Thibaud-Nissen, Françoise, Astashyn, Alexander, Ermolaeva, Olga, Farrell, Catherine M., Hart, Jennifer, Landrum, Melissa J., McGarvey, Kelly M., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Shkeda, Andrei, Sun, Hanzhen, Tamez, Pamela, Tully, Raymond E., Wallin, Craig, Webb, David, Weber, Janet, Wu, Wendy, DiCuccio, Michael, Kitts, Paul, Maglott, Donna R., Murphy, Terence D., Ostell, James M.

“… The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collection of annotated genomic, transcript and protein …”
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Meiotically Stable Natural Epialleles of Sadhu, a Novel Arabidopsis Retroposon von Rangwala, Sanjida H, Elumalai, Rangasamy, Vanier, Cheryl, Ozkan, Hakan, Galbraith, David W, Richards, Eric J

“… Epigenetic variation is a potential source of genomic and phenotypic variation among different individuals in a population, and among different varieties …”
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Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation von Pujar, Shashikant, O'Leary, Nuala A, Farrell, Catherine M, Loveland, Jane E, Mudge, Jonathan M, Wallin, Craig, Girón, Carlos G, Diekhans, Mark, Barnes, If, Bennett, Ruth, Berry, Andrew E, Cox, Eric, Davidson, Claire, Goldfarb, Tamara, Gonzalez, Jose M, Hunt, Toby, Jackson, John, Joardar, Vinita, Kay, Mike P, Kodali, Vamsi K, Martin, Fergal J, McAndrews, Monica, McGarvey, Kelly M, Murphy, Michael, Rajput, Bhanu, Rangwala, Sanjida H, Riddick, Lillian D, Seal, Ruth L, Suner, Marie-Marthe, Webb, David, Zhu, Sophia, Aken, Bronwen L, Bruford, Elspeth A, Bult, Carol J, Frankish, Adam, Murphy, Terence, Pruitt, Kim D

“… Abstract The Consensus Coding Sequence (CCDS) project provides a dataset of protein-coding regions that are identically annotated on the human and mouse …”
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RefSeq Functional Elements as experimentally assayed nongenic reference standards and functional interactions in human and mouse von Farrell, Catherine M, Goldfarb, Tamara, Rangwala, Sanjida H, Astashyn, Alexander, Ermolaeva, Olga D, Hem, Vichet, Katz, Kenneth S, Kodali, Vamsi K, Ludwig, Frank, Wallin, Craig L, Pruitt, Kim D, Murphy, Terence D

“… Eukaryotic genomes contain many nongenic elements that function in gene regulation, chromosome organization, recombination, repair, or replication, and …”
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The structure, organization and radiation of Sadhu non-long terminal repeat retroelements in Arabidopsis species von Rangwala, Sanjida H, Richards, Eric J

“… Background Sadhu elements are non-autonomous retroposons first recognized in Arabidopsis thaliana . There is a wide degree of divergence among different …”
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The L1 retrotransposition assay: A retrospective and toolkit von Rangwala, Sanjida H., Kazazian, Haig H.

“… LINE1s (L1s) are a class of mammalian non-LTR (long terminal repeat) retroelements that make up nearly 20% of the human genome. Because of the difficulty of …”
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Mouse genome annotation by the RefSeq project von McGarvey, Kelly M., Goldfarb, Tamara, Cox, Eric, Farrell, Catherine M., Gupta, Tripti, Joardar, Vinita S., Kodali, Vamsi K., Murphy, Michael R., O’Leary, Nuala A., Pujar, Shashikant, Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Webb, David, Wright, Mathew W., Murphy, Terence D., Pruitt, Kim D.

“… Complete and accurate annotation of the mouse genome is critical to the advancement of research conducted on this important model organism. The National Center …”
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The value-added genome: building and maintaining genomic cytosine methylation landscapes von Rangwala, Sanjida H, Richards, Eric J

“… Epigenetic marks, such as cytosine methylation and post-translational histone modifications, are important for interpreting and managing eukaryotic genomes …”
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A joint NCBI and EMBL-EBI transcript set for clinical genomics and research von Morales, Joannella, Pujar, Shashikant, Loveland, Jane E., Astashyn, Alex, Bennett, Ruth, Berry, Andrew, Cox, Eric, Davidson, Claire, Ermolaeva, Olga, Farrell, Catherine M., Fatima, Reham, Gil, Laurent, Goldfarb, Tamara, Gonzalez, Jose M., Haddad, Diana, Hardy, Matthew, Hunt, Toby, Jackson, John, Joardar, Vinita S., Kay, Michael, Kodali, Vamsi K., McGarvey, Kelly M., McMahon, Aoife, Mudge, Jonathan M., Murphy, Daniel N., Murphy, Michael R., Rajput, Bhanu, Rangwala, Sanjida H., Riddick, Lillian D., Thibaud-Nissen, Françoise, Threadgold, Glen, Vatsan, Anjana R., Wallin, Craig, Webb, David, Flicek, Paul, Birney, Ewan, Pruitt, Kim D., Frankish, Adam, Cunningham, Fiona, Murphy, Terence D.

“… Comprehensive genome annotation is essential to understand the impact of clinically relevant variants. However, the absence of a standard for clinical …”
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Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation von O'Leary, Nuala A., Wright, Mathew W., Brister, J. Rodney, Ciufo, Stacy, Haddad, Diana, McVeigh, Rich, Rajput, Bhanu, Robbertse, Barbara, Smith-White, Brian, Ako-Adjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M., Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S., Kodali, Vamsi K., Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M., Murphy, Michael R., O'Neill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H., Rausch, Daniel, Riddick, Lillian D., Schoch, Conrad, Shkeda, Andrei, Storz, Susan S., Sun, Hanzhen, Thibaud-Nissen, Francoise, Tolstoy, Igor, Tully, Raymond E., Vatsan, Anjana R., Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J., Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D., Pruitt, Kim D.

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The NCBI Comparative Genome Viewer von Rangwala, Sanjida H, Rudnev, Dmitry V, Ananiev, Victor V, Oh, Dong-Ha, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A, Bouk, Nathan, Evgeniev, Vladislav I, Kodali, Vamsi K, Lotov, Vadim, Mozes, Eyal, Omelchenko, Marina V, Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D, Pruitt, Kim D, Schneider, Valerie A

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Current status and new features of the Consensus Coding Sequence database von Farrell, Catherine M., O’Leary, Nuala A., Harte, Rachel A., Loveland, Jane E., Wilming, Laurens G., Wallin, Craig, Diekhans, Mark, Barrell, Daniel, Searle, Stephen M. J., Aken, Bronwen, Hiatt, Susan M., Frankish, Adam, Suner, Marie-Marthe, Rajput, Bhanu, Steward, Charles A., Brown, Garth R., Bennett, Ruth, Murphy, Michael, Wu, Wendy, Kay, Mike P., Hart, Jennifer, Rajan, Jeena, Weber, Janet, Snow, Catherine, Riddick, Lillian D., Hunt, Toby, Webb, David, Thomas, Mark, Tamez, Pamela, Rangwala, Sanjida H., McGarvey, Kelly M., Pujar, Shashikant, Shkeda, Andrei, Mudge, Jonathan M., Gonzalez, Jose M., Gilbert, James G. R., Trevanion, Stephen J., Baertsch, Robert, Harrow, Jennifer L., Hubbard, Tim, Ostell, James M., Haussler, David, Pruitt, Kim D.

“… The Consensus Coding Sequence (CCDS) project (http://www.ncbi.nlm.nih.gov/CCDS/) is a collaborative effort to maintain a dataset of protein-coding regions that …”
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Interactive visualization of whole eukaryote genome alignments using NCBI's Comparative Genome Viewer (CGV) von Rangwala, Sanjida H, Rudnev, Dmitry V, Ananiev, Victor V, Asztalos, Andrea, Benica, Barrett, Borodin, Evgeny A, Bouk, Nathan, Evgeniev, Vladislav I, Kodali, Vamsi K, Lotov, Vadim, Mozes, Eyal, Oh, Dong-Ha, Omelchenko, Marina V, Savkina, Sofya, Sukharnikov, Ekaterina, Virothaisakun, Joël, Murphy, Terence D, Pruitt, Kim D, Schneider, Valerie A

“… We report a new visualization tool for analysis of whole genome assembly-assembly alignments, the Comparative Genome Viewer (CGV) ( …”
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