Výsledky vyhledávání - "RNA structure"

RNA structure prediction using deep learning — A comprehensive review Autor Chaturvedi, Mayank, Rashid, Mahmood A., Paliwal, Kuldip K.

“…In computational biology, accurate RNA structure prediction offers several benefits, including facilitating a better understanding of RNA functions and RNA-based drug design…”
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Impact of virus subtype and host IFNL4 genotype on large-scale RNA structure formation in the genome of hepatitis C virus Autor Simmonds, Peter, Cuypers, Lize, Irving, Will L, McLauchlan, John, Cooke, Graham S, Barnes, Ellie, Ansari, M Azim

“… structure in their genomic RNA. We developed novel methods to analyze and visualize genome-scale ordered RNA structure (GORS…”
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Dynamic Molecular Epidemiology Reveals Lineage-Associated Single-Nucleotide Variants That Alter RNA Structure in Chikungunya Virus Autor Spicher, Thomas, Delitz, Markus, Schneider, Adriano de Bernardi, Wolfinger, Michael T.

“…Chikungunya virus (CHIKV) is an emerging Alphavirus which causes millions of human infections every year. Outbreaks have been reported in Africa and Asia since…”
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Ribosomal Proteins in Ribosome Assembly

“…Ribosome biogenesis is a key cellular process involving the assembly of ribosomal proteins with ribosomal RNA (rRNA) into the complex three-dimensional…”
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RNA multimerization as an organizing force for liquid-liquid phase separation Autor Bevilacqua, Philip C, Williams, Allison M, Chou, Hong-Li, Assmann, Sarah M

“…RNA interactions are exceptionally strong and highly redundant. As such, nearly any two RNAs have the potential to interact with one another over relatively…”
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D-ORB: A Web Server to Extract Structural Features of Related But Unaligned RNA Sequences Autor Dupont, Mathieu J, Major, François

“…[Display omitted] •D-ORB is a web server that simplifies the comparison of conformational landscapes and identification of native structural motifs from sets…”
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Adventures with RNA graphs Autor Schlick, Tamar

“… Illustrating these paired and non-paired interaction networks, known as RNA’s secondary (2D) structure, using mathematical graph objects has been illuminating for RNA structure analysis…”
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Seeing the PDB Autor Richardson, Jane S., Richardson, David C., Goodsell, David S.

“…Ever since the first structures of proteins were determined in the 1960s, structural biologists have required methods to visualize biomolecular structures,…”
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Evolution of the HIV-1 Rev Response Element during Natural Infection Reveals Nucleotide Changes That Correlate with Altered Structure and Increased Activity over Time Autor Sherpa, Chringma, Jackson, Patrick E H, Gray, Laurie R, Anastos, Kathryn, Le Grice, Stuart F J, Hammarskjold, Marie-Louise, Rekosh, David

“…The HIV-1 Rev response element (RRE) is a -acting RNA element characterized by multiple stem-loops. Binding and multimerization of the HIV Rev protein on the…”
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Grass Evolution Inferred from Chromosomal Rearrangements and Geometrical and Statistical Features in RNA Structure Autor Caetano-Anollés, Gustavo

“…The grasses (Poaceae) represent a monophyletic lineage that arose about 70 million years ago. The lineage contains about 10,000 species that differ widely in…”
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In Vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis Autor Babina, Arianne M., Lea, Nicholas E., Meyer, Michelle M.

“… While the structure and molecular dynamics of the tandem glycine riboswitch have been the subject of numerous in vitro studies, the in vivo behavior of the riboswitch remains largely uncharacterized…”
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italic toggle="yes">In Vivo /italic> Behavior of the Tandem Glycine Riboswitch in italic toggle="yes">Bacillus subtilis /italic Autor Arianne M. Babina, Nicholas E. Lea, Michelle M. Meyer

“… While the structure and molecular dynamics of the tandem glycine riboswitch have been the subject of numerous in vitro studies, the in vivo behavior of the riboswitch remains largely uncharacterized…”
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Minimal Hammerhead Ribozymes with Uncompromised Catalytic Activity Autor O'Rourke, Sara M., Estell, William, Scott, William G.

“…We report here that a single additional trans-Hoogsteen base-pairing interaction in the minimal hammerhead ribozyme transforms an RNA sequence possessing…”
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Monitoring Real-time Temperature Dynamics of a Short RNA Hairpin Using Förster Resonance Energy Transfer and Circular Dichroism Autor Balcerowicz, Martin, Di Antonio, Marco, Chung, Betty

“…RNA secondary structures are highly dynamic and subject to prompt changes in response to the environment…”
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RNA Secondary Structure as a First Step for Rational Design of the Oligonucleotides towards Inhibition of Influenza A Virus Replication Autor Szabat, Marta, Lorent, Dagny, Czapik, Tomasz, Tomaszewska, Maria, Kierzek, Elzbieta, Kierzek, Ryszard

“…Influenza is an important research subject around the world because of its threat to humanity…”
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Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints Autor Snoeck, Joke, Fellay, Jacques, Bartha, István, Douek, Daniel C, Telenti, Amalio

“…Background The HIV-1 genome is subject to pressures that target the virus resulting in escape and adaptation…”
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Plant RNA Biology

“…: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles…”
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Dynamic molecular epidemiology reveals lineage-associated single-nucleotide variants that alter RNA structure in Chikungunya virus Autor Spicher, Thomas, Delitz, Markus, De Bernardi Schneider, Adriano, Wolfinger, Michael T

“…Chikungunya virus (CHIKV) is an emerging Alphavirus which causes millions of human infections every year. Outbreaks have been reported in Africa and Asia since…”
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Is Thermosensing Property of RNA Thermometers Unique? Autor Shah, Premal, Gilchrist, Michael A.

“… We have developed a novel method of studying the melting of RNAs with temperature by computationally sampling the distribution of the RNA structures at various temperatures using the RNA…”
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Loops in canonical RNA pseudoknot structures Autor Nebel, Markus E, Reidys, Christian M, Wang, Rita R

“… The latter are coarse-grained RNA structures allowing for cross-serial interactions, subject to the constraint that there are…”
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