Search Results - "R programming language"

microeco: an R package for data mining in microbial community ecology by Liu, Chi, Cui, Yaoming, Li, Xiangzhen, Yao, Minjie

“…ABSTRACT A large amount of sequencing data is produced in microbial community ecology studies using the high-throughput sequencing technique, especially…”
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Single-cell chromatin state analysis with Signac by Stuart, Tim, Srivastava, Avi, Madad, Shaista, Lareau, Caleb A, Satija, Rahul

“…The recent development of experimental methods for measuring chromatin state at single-cell resolution has created a need for computational tools capable of…”
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Clustimpute: k-means Clustering with Built-in Missing Data Imputation by Pfaffel, Oliver

“…This article introduces a novel k-means clustering methodology and implementation designed to handle missing values efficiently. The method supports…”
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Machine Learning-Based Gully Erosion Susceptibility Mapping: A Case Study of Eastern India by Saha, Sunil, Roy, Jagabandhu, Arabameri, Alireza, Blaschke, Thomas, Tien Bui, Dieu

“…Gully erosion is a form of natural disaster and one of the land loss mechanisms causing severe problems worldwide. This study aims to delineate the areas with…”
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An R Package for Computing Canadian Assessment of Physical Literacy by Barnes, Joel D, Guerrero, Michelle D

“…The Canadian Assessment of Physical Literacy (CAPL) is the first comprehensive protocol designed to assess a child's level of physical literacy. Current…”
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A review of spline function procedures in R by Perperoglou, Aris, Sauerbrei, Willi, Abrahamowicz, Michal, Schmid, Matthias

“…Background With progress on both the theoretical and the computational fronts the use of spline modelling has become an established tool in statistical…”
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geneHapR: an R package for gene haplotypic statistics and visualization by Zhang, Renliang, Jia, Guanqing, Diao, Xianmin

“…Background Together with application of next-generation sequencing technologies and increased accumulation of genomic variation data in different organism…”
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BUGSnet: an R package to facilitate the conduct and reporting of Bayesian network Meta-analyses by Béliveau, Audrey, Boyne, Devon J., Slater, Justin, Brenner, Darren, Arora, Paul

“…Background Several reviews have noted shortcomings regarding the quality and reporting of network meta-analyses (NMAs). We suspect that this issue may be…”
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Interpreting blood GLUcose data with R package iglu by Broll, Steven, Urbanek, Jacek, Buchanan, David, Chun, Elizabeth, Muschelli, John, Punjabi, Naresh M., Gaynanova, Irina

“…Continuous Glucose Monitoring (CGM) data play an increasing role in clinical practice as they provide detailed quantification of blood glucose levels during…”
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Circlize package in R and Analytic Hierarchy Process by Shen, Gangxu, Wang, Wei-Lung

“…The morphological diversity of floral organs can largely be attributed to functional divergence in the MADS-box gene family. Nonetheless, research based on the…”
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spatialLIBD: an R/Bioconductor package to visualize spatially-resolved transcriptomics data by Pardo, Brenda, Spangler, Abby, Weber, Lukas M., Page, Stephanie C., Hicks, Stephanie C., Jaffe, Andrew E., Martinowich, Keri, Maynard, Kristen R., Collado-Torres, Leonardo

“…Background Spatially-resolved transcriptomics has now enabled the quantification of high-throughput and transcriptome-wide gene expression in intact tissue…”
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Memes: A motif analysis environment in R using tools from the MEME Suite by Nystrom, Spencer L., McKay, Daniel J.

“…Identification of biopolymer motifs represents a key step in the analysis of biological sequences. The MEME Suite is a widely used toolkit for comprehensive…”
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plyranges: a grammar of genomic data transformation by Lee, Stuart, Cook, Dianne, Lawrence, Michael

“…Bioconductor is a widely used R-based platform for genomics, but its host of complex genomic data structures places a cognitive burden on the user. For most…”
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coda4microbiome: compositional data analysis for microbiome cross-sectional and longitudinal studies by Calle, M. Luz, Pujolassos, Meritxell, Susin, Antoni

“…Background One of the main challenges of microbiome analysis is its compositional nature that if ignored can lead to spurious results. Addressing the…”
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estimateR: an R package to estimate and monitor the effective reproductive number by Scire, Jérémie, Huisman, Jana S., Grosu, Ana, Angst, Daniel C., Lison, Adrian, Li, Jinzhou, Maathuis, Marloes H., Bonhoeffer, Sebastian, Stadler, Tanja

“…Background Accurate estimation of the effective reproductive number ( R e ) of epidemic outbreaks is of central relevance to public health policy and decision…”
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Isodon rubescens research literature based on Web of Science database for visual analysis: A review by Xu, Shaowei, Wu, Jing, Yang, Qingshan, Fang, Huqiang, Xu, Teng, He, Bing, Chen, Na, Xing, Shihai

“…Isodon rubescens has been used as an herbal medicine in China for a long time. The significant value of development and utilization is affirmative…”
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ggmotif: An R Package for the extraction and visualization of motifs from MEME software by Li, Xiang, Ma, Linna, Mei, Xinyue, Liu, Yixiang, Huang, Huichuan

“…MEME (Multiple Em for Motif Elicitation) is the most commonly used tool to identify motifs within deoxyribonucleic acid (DNA) or protein sequences. However,…”
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BPG: Seamless, automated and interactive visualization of scientific data by P’ng, Christine, Green, Jeffrey, Chong, Lauren C., Waggott, Daryl, Prokopec, Stephenie D., Shamsi, Mehrdad, Nguyen, Francis, Mak, Denise Y. F., Lam, Felix, Albuquerque, Marco A., Wu, Ying, Jung, Esther H., Starmans, Maud H. W., Chan-Seng-Yue, Michelle A., Yao, Cindy Q., Liang, Bianca, Lalonde, Emilie, Haider, Syed, Simone, Nicole A., Sendorek, Dorota, Chu, Kenneth C., Moon, Nathalie C., Fox, Natalie S., Grzadkowski, Michal R., Harding, Nicholas J., Fung, Clement, Murdoch, Amanda R., Houlahan, Kathleen E., Wang, Jianxin, Garcia, David R., de Borja, Richard, Sun, Ren X., Lin, Xihui, Chen, Gregory M., Lu, Aileen, Shiah, Yu-Jia, Zia, Amin, Kearns, Ryan, Boutros, Paul C.

“…Background We introduce BPG, a framework for generating publication-quality, highly-customizable plots in the R statistical environment. Results This…”
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gcplyr: an R package for microbial growth curve data analysis by Blazanin, Michael

“…Background Characterization of microbial growth is of both fundamental and applied interest. Modern platforms can automate collection of high-throughput…”
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Kendallknight: An R package for efficient implementation of Kendall’s correlation coefficient computation by Sepulveda, Mauricio Vargas

“…The kendallknight package introduces an efficient implementation of Kendall’s correlation coefficient computation, significantly improving the processing time…”
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